; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G011230 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G011230
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNuclear transcription factor Y subunit B-3
Genome locationCmo_Chr01:9270826..9271536
RNA-Seq ExpressionCmoCh01G011230
SyntenyCmoCh01G011230
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607751.1 hypothetical protein SDJN03_01093, partial [Cucurbita argyrosperma subsp. sororia]1.7e-11798.74Show/hide
Query:  MEKFTDHCASLCSSSSPPP--SSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFD
        MEKFTDHCASLCSSSSPPP  SSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFD
Subjt:  MEKFTDHCASLCSSSSPPP--SSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFD

Query:  EKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPD
        EKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDEL RNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPD
Subjt:  EKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPD

Query:  SVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        SVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
Subjt:  SVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

XP_022941469.1 uncharacterized protein LOC111446758 [Cucurbita moschata]4.8e-120100Show/hide
Query:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
        MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
Subjt:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK

Query:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
        PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
Subjt:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV

Query:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
Subjt:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

XP_022981598.1 uncharacterized protein LOC111480668 [Cucurbita maxima]3.3e-11397.03Show/hide
Query:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
        MEKFTDHCASLCSSSSPP    SSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLL LLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
Subjt:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK

Query:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
        PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDEL RNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNR LVRNLETCLPDLLPDSV
Subjt:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV

Query:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
Subjt:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

XP_023524758.1 uncharacterized protein LOC111788599 isoform X1 [Cucurbita pepo subsp. pepo]3.6e-11594.31Show/hide
Query:  MEKFTDHCASLCSSSSPPP----------SSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLI
        MEKFTDHCASLCSSSSPPP          SSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFL+LL+LLLIPSFFFLANKKSDSSQISDRNPLLI
Subjt:  MEKFTDHCASLCSSSSPPP----------SSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLI

Query:  STAGHLFDEKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLET
        STAGHLFDEKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDEL  NLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLET
Subjt:  STAGHLFDEKPQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLET

Query:  CLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        CLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
Subjt:  CLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

XP_023524760.1 uncharacterized protein LOC111788599 isoform X2 [Cucurbita pepo subsp. pepo]1.9e-11697.46Show/hide
Query:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
        MEKFTDHCASLCSSSSPPP  SSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFL+LL+LLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
Subjt:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK

Query:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
        PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDEL  NLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
Subjt:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV

Query:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
Subjt:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

TrEMBL top hitse value%identityAlignment
A0A0A0K6W9 Uncharacterized protein1.1e-5861.32Show/hide
Query:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
        MEKFT HC+SL           +SSSS   QSR N+ + STLLASI FL+LRFSPSF +LL+LLLIP+  F+ANKKS        NPL      HLFDE 
Subjt:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK

Query:  PQRTVEELSAAQIGEELSSDDD----SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLP
        PQ T  + S  QIG+ +SSDD+    SSSN G    GDF+SDLWM LDEL RNLP S+D SS   +DDDSLIEIPLLP S+ I         RNLETCLP
Subjt:  PQRTVEELSAAQIGEELSSDDD----SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLP

Query:  DLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        +LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR  TVCN
Subjt:  DLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

A0A2N9IRF2 Uncharacterized protein7.2e-1335.06Show/hide
Query:  SKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLA----------NKKSDSSQISDRNPLLISTAGHLFDEKPQRTVEELSAAQIGEE--
        S+ S L V V+   L    F+S  FSP+ L  + +L++ + F +           N   D   I D+  LL +  G    + PQ  +E     ++ +E  
Subjt:  SKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLA----------NKKSDSSQISDRNPLLISTAGHLFDEKPQRTVEELSAAQIGEE--

Query:  --------------LSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDS-SSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVL
                           DS S+     G  FE +L MC + + +NL FSD S S EDDDSLIEI  LP S +   D   E  +  ++ LPDLLP+S+ 
Subjt:  --------------LSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDS-SSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVL

Query:  KQNGFVELLEEI---NEEDNLIEIDISRGFN
        +Q G +ELL EI   NEE+NLIEID+S G N
Subjt:  KQNGFVELLEEI---NEEDNLIEIDISRGFN

A0A5D3C7W2 Uncharacterized protein5.8e-5559.11Show/hide
Query:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFL-SLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDE
        MEKFT HC+SL           +SSSS   QSR N+ + STLLASI FL +LRFSPSF +LL+LLL+P+  FLAN+KS             S   HLFDE
Subjt:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFL-SLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDE

Query:  KPQRTVEELSAAQIGEELSSDDD-------SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRELVRNLE
        K   T  + SA  IGE  SSDD+       +SSN G    GDF+SDLWM LDEL RNLP S+D SS   +DDDSLIEIPLLP S+ I         RNLE
Subjt:  KPQRTVEELSAAQIGEELSSDDD-------SSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSS---EDDDSLIEIPLLPYSDAIRTDSNRELVRNLE

Query:  TCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        TCLP+LLPDSVL+Q+GFVELLEEINEEDNLIEIDIS+GFNR STVCN
Subjt:  TCLPDLLPDSVLKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

A0A6J1FNF5 uncharacterized protein LOC1114467582.3e-120100Show/hide
Query:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
        MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
Subjt:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK

Query:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
        PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
Subjt:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV

Query:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
Subjt:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

A0A6J1J2I9 uncharacterized protein LOC1114806681.6e-11397.03Show/hide
Query:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
        MEKFTDHCASLCSSSSPP    SSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLL LLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK
Subjt:  MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEK

Query:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV
        PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDEL RNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNR LVRNLETCLPDLLPDSV
Subjt:  PQRTVEELSAAQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSV

Query:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
        LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN
Subjt:  LKQNGFVELLEEINEEDNLIEIDISRGFNRVSTVCN

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGT
CGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGA
ACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCC
GCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTA
TCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAAT
TAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATC
GAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGTTCACAGACCACTGCGCTTCACTCTGTTCATCATCATCGCCGCCGCCGTCGTCGTCGTCGTCGTCGTCTTCTTCTTCCAAACAATCACGCCTCAATGTTGT
CGTTGTTTCAACTCTTCTAGCTTCAATTTGCTTTCTCAGTCTCCGATTCTCACCTTCCTTCCTTAGTCTTCTTATTCTTCTTCTAATCCCTTCGTTTTTCTTCCTCGCGA
ACAAAAAATCCGATTCCAGTCAAATCTCGGACCGGAATCCGCTTCTCATCTCCACCGCCGGCCACCTGTTCGACGAAAAGCCTCAAAGAACAGTGGAAGAACTATCCGCC
GCGCAAATCGGAGAAGAGCTTTCTTCTGATGATGATAGTAGCAGTAATGGCGGATTTGAAAGTGGCGGAGATTTCGAGTCCGATCTCTGGATGTGTTTGGACGAACTGTA
TCGGAATCTTCCGTTCTCTGACGATTCGAGTTCCGAAGATGACGATAGCTTGATCGAAATTCCTCTTCTTCCATACTCGGACGCGATTCGAACGGATTCGAACAGAGAAT
TAGTTCGAAATCTCGAGACGTGTTTGCCTGATTTGTTACCGGATTCTGTCCTGAAACAGAACGGATTCGTGGAGCTTTTGGAAGAGATCAACGAGGAAGATAACTTAATC
GAGATCGATATTTCCAGAGGCTTCAATCGAGTTTCCACTGTTTGCAACTGA
Protein sequenceShow/hide protein sequence
MEKFTDHCASLCSSSSPPPSSSSSSSSSSKQSRLNVVVVSTLLASICFLSLRFSPSFLSLLILLLIPSFFFLANKKSDSSQISDRNPLLISTAGHLFDEKPQRTVEELSA
AQIGEELSSDDDSSSNGGFESGGDFESDLWMCLDELYRNLPFSDDSSSEDDDSLIEIPLLPYSDAIRTDSNRELVRNLETCLPDLLPDSVLKQNGFVELLEEINEEDNLI
EIDISRGFNRVSTVCN