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CmoCh01G012350 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G012350
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDynein light chain
Genome locationCmo_Chr01:9895857..9896473
RNA-Seq ExpressionCmoCh01G012350
SyntenyCmoCh01G012350
Gene Ontology termsGO:0007017 - microtubule-based process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005874 - microtubule (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030286 - dynein complex (cellular component)
GO:0045505 - dynein intermediate chain binding (molecular function)
GO:0051959 - dynein light intermediate chain binding (molecular function)
InterPro domainsIPR001372 - Dynein light chain, type 1/2
IPR037177 - Dynein light chain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607846.1 hypothetical protein SDJN03_01188, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5799.11Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
        MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP

Query:  THFAASETLKGS
        THF ASETLKGS
Subjt:  THFAASETLKGS

XP_022941140.1 dynein light chain 2, cytoplasmic-like [Cucurbita moschata]7.2e-58100Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
        MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP

Query:  THFAASETLKGS
        THFAASETLKGS
Subjt:  THFAASETLKGS

XP_022981659.1 dynein light chain 2, cytoplasmic-like [Cucurbita maxima]3.6e-5799.11Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
        MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP

Query:  THFAASETLKGS
        TH AASETLKGS
Subjt:  THFAASETLKGS

XP_023525676.1 dynein light chain 2, cytoplasmic-like [Cucurbita pepo subsp. pepo]4.0e-5696.43Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
        MLEGKAIVGETDMLQAMQQDAL+LAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP

Query:  THFAASETLKGS
        THF AS+TLKG+
Subjt:  THFAASETLKGS

XP_038899068.1 dynein light chain 2, cytoplasmic [Benincasa hispida]1.1e-4584.82Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA--PQQHP
        MLEGKAI+GETDMLQAMQQDAL+LAAKALD FDVTEATDIARFIKKEFD+ +GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS A   +Q P
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDA--PQQHP

Query:  HPTHFAASETLK
         PT F+  ETLK
Subjt:  HPTHFAASETLK

TrEMBL top hitse value%identityAlignment
A0A1S3BZU7 Dynein light chain2.2e-4480Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---
        MLEGKAI+GETDML+AMQQDAL+LA+KALD FDVTEATDIARFIKKEFDRT+GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGS A Q+    
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---

Query:  --PHPTHFAASETLK
          P   HF+  +TLK
Subjt:  --PHPTHFAASETLK

A0A5A7T1H5 Dynein light chain2.2e-4480Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---
        MLEGKAI+GETDML+AMQQDAL+LA+KALD FDVTEATDIARFIKKEFDRT+GGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLA+LLFRGS A Q+    
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQH---

Query:  --PHPTHFAASETLK
          P   HF+  +TLK
Subjt:  --PHPTHFAASETLK

A0A6J1CDL8 Dynein light chain6.9e-4684.68Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
        MLEGKAI+GETDMLQ MQQDALDLAAKALD FDVTEATDIARFIKKEFDR HG GWQCIVGTDFGSFVTHCFGCFIYFCVG+LA+LLFRGS  PQQ    
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP

Query:  THFAASETLKG
          FAA E LKG
Subjt:  THFAASETLKG

A0A6J1FSQ1 Dynein light chain3.5e-58100Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
        MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP

Query:  THFAASETLKGS
        THFAASETLKGS
Subjt:  THFAASETLKGS

A0A6J1J2G7 Dynein light chain1.7e-5799.11Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
        MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHP

Query:  THFAASETLKGS
        TH AASETLKGS
Subjt:  THFAASETLKGS

SwissProt top hitse value%identityAlignment
O02414 Dynein light chain LC6, flagellar outer arm1.3e-1750.56Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M E KA++   DM + MQQDA+D A +AL++F++ +  DIA +IKKEFD+ +   W CIVG +FGS+VTH    FIYF +G +A+LLF+
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

O96860 Dynein light chain 2, cytoplasmic1.3e-1750.56Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M + KA++   DM + MQQDA+D A +AL+++++ +  DIA FIKKEFD+ +   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q22799 Dynein light chain 1, cytoplasmic2.2e-1749.44Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M++ KA++   DM   MQQDA+D A +AL+++++ +  DIA +IKKEFD+ +   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q24117 Dynein light chain 1, cytoplasmic2.9e-1749.44Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        M + KA++   DM + MQQDA+D A +AL+++++ +  DIA +IKKEFD+ +   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Q39580 Dynein 8 kDa light chain, flagellar outer arm2.9e-1751.76Show/hide
Query:  KAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        KA++   DM + MQ DA+D A +AL+++++ +  DIA +IKKEFDR H   W CIVG +FGS+VTH    FIYF +G +AILLF+
Subjt:  KAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

Arabidopsis top hitse value%identityAlignment
AT1G52240.2 RHO guanyl-nucleotide exchange factor 114.0e-2252.13Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAP
        MLEGKA+V ++DM   MQ  A+  A++ALD FDV +   IA  IKKEFD  +G GWQC+VG++FG F TH  G FIYF + +L  L+F+G+  P
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAP

AT3G16120.1 Dynein light chain type 1 family protein3.6e-2356.04Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS
        MLEGKA V ETDM   MQ  A+ +A+++LD FDV ++  IA  IKKEFD  +G GWQC+VGT+FG F TH  G FIYF +G+L  L+F+G+
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS

AT4G15930.1 Dynein light chain type 1 family protein1.2e-1544.71Show/hide
Query:  KAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR
        +A++   DM   MQ++A+++A  A +++ V +  DIA  IKKEFD+ HG  W CIVG +FGS+VTH    F+YF +   A+LLF+
Subjt:  KAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFR

AT4G27360.1 Dynein light chain type 1 family protein6.4e-3676.92Show/hide
Query:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS
        MLEGKA++G+TDM Q M++DAL LA+KALD FDVTE T IARFIKKEFDR++G GWQCIVGT FGSFVTHC GCFI+F VGSL ILLF+GS
Subjt:  MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGS

AT5G20110.1 Dynein light chain type 1 family protein4.0e-1445.45Show/hide
Query:  DMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPH
        DM   MQ  A   A   LD  +   +  +A  +KKEFD+ +G  W CIVG+ FGSFVTH  GCFIYF +  L +LLF+    P   PH
Subjt:  DMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGAAGGCAAAGCAATCGTGGGCGAGACGGACATGCTGCAGGCGATGCAGCAGGACGCGTTGGACCTGGCGGCTAAGGCACTGGACAGGTTTGATGTGACGGAAGC
GACTGACATTGCTCGGTTCATAAAGAAGGAATTTGACAGGACACATGGGGGAGGTTGGCAGTGCATTGTGGGAACAGATTTTGGGTCATTTGTGACCCATTGTTTTGGGT
GTTTCATATACTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGATGCCCCTCAACAACACCCTCACCCAACTCACTTCGCTGCTTCAGAAACCCTCAAA
GGATCCTGA
mRNA sequenceShow/hide mRNA sequence
AGCCGCCAGCTCCGCCGCGTGGGAGGCATGTTGGAAGGCAAAGCAATCGTGGGCGAGACGGACATGCTGCAGGCGATGCAGCAGGACGCGTTGGACCTGGCGGCTAAGGC
ACTGGACAGGTTTGATGTGACGGAAGCGACTGACATTGCTCGGTTCATAAAGAAGGAATTTGACAGGACACATGGGGGAGGTTGGCAGTGCATTGTGGGAACAGATTTTG
GGTCATTTGTGACCCATTGTTTTGGGTGTTTCATATACTTTTGTGTTGGAAGCCTTGCAATTTTGCTGTTTAGGGGCTCTGATGCCCCTCAACAACACCCTCACCCAACT
CACTTCGCTGCTTCAGAAACCCTCAAAGGATCCTGAATTTTAATTCTTCTTCCAACTCATTGTAGTTCAACAAACACGCTTATATAAGAAACGTTTCGTTCTCTCTCTAG
TCGATGTGACATGTCACAATCCATTTTCTTAGGACTTAACGTACTCGTTGGCACACAATTTGGTGTCTAGCTCTAATACTCTTTATAATAGACTAAGCCTACT
Protein sequenceShow/hide protein sequence
MLEGKAIVGETDMLQAMQQDALDLAAKALDRFDVTEATDIARFIKKEFDRTHGGGWQCIVGTDFGSFVTHCFGCFIYFCVGSLAILLFRGSDAPQQHPHPTHFAASETLK
GS