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CmoCh01G012460 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G012460
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNAC domain protein
Genome locationCmo_Chr01:10007578..10007871
RNA-Seq ExpressionCmoCh01G012460
SyntenyCmoCh01G012460
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036871.1 uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa]1.8e-2571.43Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        MPTIFQSQ  P   PS AG  RE GR+R++RS CRSLSFGG+VRGGRN+ A  GD+ RR QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

KAG6607862.1 hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia]2.0e-4398.97Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGV RGGRNVTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

KAG7024857.1 hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-2574Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGR--SRSLRSNCRSLSFGGVVRGGRNV-TAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        MPTIFQSQ QP  RPS A A    GR  SRS+RS CRS SF G+VR GRNV TA GDK RR QGRRE+LRRAL PP R+PTLRWLNFR TPSRLSNMSMA
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGR--SRSLRSNCRSLSFGGVVRGGRNV-TAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

KGN60027.2 hypothetical protein Csa_001878 [Cucumis sativus]1.2e-2470.41Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+VRGGRN+ A  GD+ RR QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

XP_011652880.1 uncharacterized protein LOC105435142 [Cucumis sativus]1.2e-2470.41Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+VRGGRN+ A  GD+ RR QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

TrEMBL top hitse value%identityAlignment
A0A0A0LD23 Uncharacterized protein5.8e-2570.41Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        MPTIFQSQ  P   PS AG  RE GR+R++RS CRS SFGG+VRGGRN+ A  GD+ RR QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

A0A2C9W6J8 Uncharacterized protein2.6e-0953.09Show/hide
Query:  AGAVREGGRSRSLRSNCRSLSFGGVVRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        A  VR   R  + R  C   +  G VR  R+     GDKL+R Q  +E++RRALTPPNR+ TLRW NFR TPSRLSNMS A
Subjt:  AGAVREGGRSRSLRSNCRSLSFGGVVRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

A0A4U5P590 Uncharacterized protein4.4e-0946.3Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSR----------SLRSNCRSLSFGGVVRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPS
        M TI Q Q +   +P    ++ EG R R            RS C   +  G VR  ++      DKLRR Q   E+LRRAL PPNRR TLRW NF+ TPS
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSR----------SLRSNCRSLSFGGVVRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPS

Query:  RLSNMSMA
        RLSNMSMA
Subjt:  RLSNMSMA

A0A5A7T5L7 Uncharacterized protein8.9e-2671.43Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA
        MPTIFQSQ  P   PS AG  RE GR+R++RS CRSLSFGG+VRGGRN+ A  GD+ RR QG RE+LRRAL PP+RRPTLRW+NFR TPSRLS MSMA
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTA-AGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA

B9N1L2 Uncharacterized protein4.4e-0946.3Show/hide
Query:  MPTIFQSQQQPASRPSHAGAVREGGRSR----------SLRSNCRSLSFGGVVRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPS
        M TI Q Q +   +P    ++ EG R R            RS C   +  G VR  ++      DKLRR Q   E+LRRAL PPNRR TLRW NF+ TPS
Subjt:  MPTIFQSQQQPASRPSHAGAVREGGRSR----------SLRSNCRSLSFGGVVRGGRN-VTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPS

Query:  RLSNMSMA
        RLSNMSMA
Subjt:  RLSNMSMA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G15518.1 unknown protein5.4e-0746.15Show/hide
Query:  REGGRSRSLRSNCRSLSFGGVVRGGRN--VTAAGDKLRR--LQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMS
        R  G    +R  C      G  +  R+  V  + ++L R    G RE+LRRALTPP RR  LRWLNFR TPSRL  MS
Subjt:  REGGRSRSLRSNCRSLSFGGVVRGGRN--VTAAGDKLRR--LQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGGAGCCGGAGCCTTAGATCGAATTGCAGGAGCTT
GAGTTTTGGGGGAGTGGTTAGAGGTGGCCGTAATGTGACGGCGGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCA
ACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTACAATTTTCCAGTCCCAACAGCAGCCTGCTTCCAGGCCGTCGCACGCCGGCGCCGTAAGGGAAGGTGGCCGGAGCCGGAGCCTTAGATCGAATTGCAGGAGCTT
GAGTTTTGGGGGAGTGGTTAGAGGTGGCCGTAATGTGACGGCGGCCGGAGATAAGCTCCGGCGGCTTCAGGGCAGAAGAGAGATGTTGAGAAGGGCGTTGACGCCGCCCA
ACCGGAGACCCACTCTCCGGTGGTTGAATTTCCGAGCAACTCCCAGTCGGCTCTCGAATATGTCTATGGCTTGA
Protein sequenceShow/hide protein sequence
MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVVRGGRNVTAAGDKLRRLQGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA