CuGenDBv2

Gene ID	CmoCh01G013540
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Biogenesis of lysosome-related organelles complex 1 subunit 7
Genome location	Cmo_Chr01:10697561..10701497
RNA-Seq Expression	CmoCh01G013540
Synteny	CmoCh01G013540
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0031083 - BLOC-1 complex (cellular component)
InterPro domains	IPR017246 - Snapin IPR028119 - Snapin/Pallidin/Snn1

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022940121.1 uncharacterized protein LOC111445840 isoform X1 [Cucurbita moschata]

1.7e-59

82.82

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP
                ELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR+     +P
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP

XP_022940122.1 uncharacterized protein LOC111445840 isoform X2 [Cucurbita moschata]

1.7e-59

82.82

Show/hide

Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP
                ELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR+     +P
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP

XP_022981117.1 uncharacterized protein LOC111480361 [Cucurbita maxima]

3.9e-56

79.75

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTS             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP
                ELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR      +P
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP

XP_023523877.1 uncharacterized protein LOC111787988 [Cucurbita pepo subsp. pepo]

1.4e-58

82.21

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEEN+IANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP
                ELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR      +P
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP

XP_023535159.1 uncharacterized protein LOC111796673 [Cucurbita pepo subsp. pepo]

1.4e-45

72.26

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHS EKV DD AN+DS VS ELE SIS NG ++EEND+AN NL +SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDR+T              
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR
               IELDQLLEDAPFPFIMQHA RISSVRKRVLSLNSILRS+QRR+DNIDR
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1F9C2 Biogenesis of lysosome-related organelles complex 1 subunit 7

8.7e-46

71.61

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHS EKV DD AN+DS VS ELE SIS NGD++EEND+AN NL +SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDR+T+V++          
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR
                ELDQLLE APFPFIMQHA RISSVRKRVLSLNSIL S+QRR+DNIDR
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR

A0A6J1FHK0 Biogenesis of lysosome-related organelles complex 1 subunit 7

8.1e-60

82.82

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP
                ELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR+     +P
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP

A0A6J1FIR1 Biogenesis of lysosome-related organelles complex 1 subunit 7

8.1e-60

82.82

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTS             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP
                ELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR+     +P
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP

A0A6J1IKP2 Biogenesis of lysosome-related organelles complex 1 subunit 7

3.3e-45

70.97

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Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHS EKV DD AN+DS  S ELE SIS NG+++EEND+AN NL +SNALANGLSSML+NI+RDFDSKADDTLKSQSQLS SLDR+T+             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR
                ELDQLLEDAPFPFIMQHA RISSVRKRVLSLNSILRS+QRR+DNIDR
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR

A0A6J1J178 Biogenesis of lysosome-related organelles complex 1 subunit 7

1.9e-56

79.75

Show/hide

Query:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN
        MHSLEKVHDDSANKDSKVSAELEPSISPNGD E+ENDIA MNLG+SNALANGLSSML NIMRDFDSKADDTLKSQSQLSFSLDRLTS             
Subjt:  MHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSN

Query:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP
                ELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDR      +P
Subjt:  NIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G79070.1 SNARE-associated protein-related

6.0e-23

53.98

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Query:  GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSIL
        G   A+A GLS+ML ++++DFDSKA DTL SQ +LS SLDRL                       ELDQLLE+AP PFI+QHA RISSV++RV SLN +L
Subjt:  GDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQGKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSIL

Query:  RSVQRRVDNIDRI
        +SVQRR+DNID +
Subjt:  RSVQRRVDNIDRI

Sequences

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CDS sequence

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mRNA sequence

Show/hide mRNA sequence

ATGGAGAAATTGCAAGGGATGCACAGTCTGGAGAAAGTGCACGATGATTCTGCCAACAAGGACAGCAAAGTCTCTGCTGAATTGGAGCCTTCTATTAGTCCAAATGGTGA
TATCGAGGAAGAAAATGATATTGCAAATATGAATTTGGGAGACTCTAATGCTCTAGCAAATGGGCTCTCTTCCATGCTTATGAACATCATGAGGGATTTTGACTCCAAAG
CTGATGATACTCTTAAAAGCCAAAGCCAGCTTTCATTTTCCCTTGACCGACTTACTTCAGTTTTATCATATGAAATAGAATTTCTTCCTTTGTCCAATAATATAGTTCAG
GGGAAGTGTATAGAACTGGATCAATTACTTGAAGATGCTCCTTTTCCATTCATCATGCAGCATGCCTTGAGGATTTCTAGTGTAAGAAAGAGAGTGTTGTCTCTAAATTC
CATCTTAAGATCCGTACAACGAAGAGTAGATAACATAGATCGGATATTCGTTCCTCTCAAAGTTCCTCGCAACCTCATAATGGTTGATCAAGTCGGGAATTCCAACTATT
TGTTTAATTGATACAAATTGGGACTCGGATCTCTCAGATATTATGATGATTGTACGTATCTGCTGTCCCTTTTGTGTATTCATTTTGACTACTATGCTTGGAAATACTGT
GATAGAAAAACTATTTGTGAGTATGAGTCCTGTTTCTGAAATCAGGTGGTTCTTGCAGATTATTTTAACCTGTAAGTTGCTGTGTTCTGTTTTGTTTTTAAGAGAGTTTA
TTAAAATAAGAATTTTCAAATGATCGAGTCATAATAAAGTGATTTAAATGAAATAATTTTAAGCTACGATGGTTACACGAGTTTTCTTGATAATCTAATGTCGTAGAGTT
ATACTACACGGTTGTCTTGTGAGATCAGCTTAAGTGTATTCAGGCTATCAGTTGAAAAAAAATTCCCATTTCCTATTTTAGTTGATTAAAAAAAACTTTATTAGAAATAC
CAAGT

Protein sequence

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MEKLQGMHSLEKVHDDSANKDSKVSAELEPSISPNGDIEEENDIANMNLGDSNALANGLSSMLMNIMRDFDSKADDTLKSQSQLSFSLDRLTSVLSYEIEFLPLSNNIVQ
GKCIELDQLLEDAPFPFIMQHALRISSVRKRVLSLNSILRSVQRRVDNIDRIFVPLKVPRNLIMVDQVGNSNYLFN

CmoCh01G013540 (gene) of Cucurbita moschata (Rifu) v1 genome