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CmoCh01G013760 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G013760
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontransmembrane protein 56-like
Genome locationCmo_Chr01:10831527..10835650
RNA-Seq ExpressionCmoCh01G013760
SyntenyCmoCh01G013760
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6607986.1 TLC domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]2.7e-5399.12Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSSTISTFCLG+
Subjt:  TFRSSTISTFCLGL

KAG7024695.1 Transmembrane protein 56 [Cucurbita argyrosperma subsp. argyrosperma]7.0e-4985.48Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLV SDPVVPYISIPAGILASKLVYD+TDLISGVYFKSYSNLSRIQR+EWNNRAMSTLHAIFITAASLYMVFLSDL+SDRYFG I
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGLQPATCNTNHY
        TFRSSTIS F LG+   + +  ++
Subjt:  TFRSSTISTFCLGLQPATCNTNHY

XP_022940088.1 transmembrane protein 56-like [Cucurbita moschata]2.7e-5399.12Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSSTISTFCLG+
Subjt:  TFRSSTISTFCLGL

XP_022976835.1 transmembrane protein 56-like [Cucurbita maxima]3.1e-4992.98Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYD+TDLISGVYFKSYSNLSRIQR+EWNNRAMSTLHAIFITAASLYMVFLSDL+SDRYFG I
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSST+S F LG+
Subjt:  TFRSSTISTFCLGL

XP_022982442.1 transmembrane protein 56-like [Cucurbita maxima]7.9e-5398.25Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLY+VFLSDLYSDRYFGFI
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSSTISTFCLG+
Subjt:  TFRSSTISTFCLGL

TrEMBL top hitse value%identityAlignment
A0A6J1CIF9 transmembrane protein 56-like3.2e-4788.6Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQ+QAEQLLKYLVLSDP+VPYISIPAGILASKLV+DLTD IS VYFKSYSNLSRIQR+EWNNRAMSTLHAIFITAA+LY+VFLSDLYSD++FG I
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSSTISTF LG+
Subjt:  TFRSSTISTFCLGL

A0A6J1FBK5 transmembrane protein 56-like7.5e-4992.98Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLV SDPVVPYISIPAGILASKLVYD+TDLISGVYFKSYSNLSRIQR+EWNNRAMSTLHAIFITAASLYMVFLSDL+SDRYFG I
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSSTIS F LG+
Subjt:  TFRSSTISTFCLGL

A0A6J1FJ18 transmembrane protein 56-like1.3e-5399.12Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSSTISTFCLG+
Subjt:  TFRSSTISTFCLGL

A0A6J1IGT7 transmembrane protein 56-like1.5e-4992.98Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYD+TDLISGVYFKSYSNLSRIQR+EWNNRAMSTLHAIFITAASLYMVFLSDL+SDRYFG I
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSST+S F LG+
Subjt:  TFRSSTISTFCLGL

A0A6J1J4U4 transmembrane protein 56-like3.8e-5398.25Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI
        MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLY+VFLSDLYSDRYFGFI
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFI

Query:  TFRSSTISTFCLGL
        TFRSSTISTFCLG+
Subjt:  TFRSSTISTFCLGL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G31300.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein4.0e-2651.75Show/hide
Query:  SLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFG-FI
        ++KSY  QA+ L+K  +L+DP +PY S+  GI   K+VYDL   IS  + K+Y  L++IQR+EWNNR +ST+HAIFI+A SLY VF SDL+SDR+    +
Subjt:  SLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFG-FI

Query:  TFRSSTISTFCLGL
         FRSS +S+  LG+
Subjt:  TFRSSTISTFCLGL

AT1G31300.2 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein4.0e-2651.75Show/hide
Query:  SLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFG-FI
        ++KSY  QA+ L+K  +L+DP +PY S+  GI   K+VYDL   IS  + K+Y  L++IQR+EWNNR +ST+HAIFI+A SLY VF SDL+SDR+    +
Subjt:  SLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFG-FI

Query:  TFRSSTISTFCLGL
         FRSS +S+  LG+
Subjt:  TFRSSTISTFCLGL

AT4G10360.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein4.3e-1244.3Show/hide
Query:  SIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSST
        SI +G L  K+VYDLT  IS + F  Y  L    RMEWNNR  ST HA+F + AS+Y + +SD + +   G     S+T
Subjt:  SIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSST

AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein3.6e-2753.45Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGF
        M +KSYQ+QAE  +++ +L+DP +PY S+  GI   KLVYDLT+L S ++ KSYS L++I+R+EWNNR +ST+HAIFI+  +LY  F SDL+SD R    
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGF

Query:  IT-FRSSTISTFCLGL
        +T FR+S +STF LG+
Subjt:  IT-FRSSTISTFCLGL

AT4G19645.2 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein3.6e-2753.45Show/hide
Query:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGF
        M +KSYQ+QAE  +++ +L+DP +PY S+  GI   KLVYDLT+L S ++ KSYS L++I+R+EWNNR +ST+HAIFI+  +LY  F SDL+SD R    
Subjt:  MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSD-RYFGF

Query:  IT-FRSSTISTFCLGL
        +T FR+S +STF LG+
Subjt:  IT-FRSSTISTFCLGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACTGAAGTCATATCAAAGCCAGGCCGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCTGCAGGCATACTTGCTAGCAA
ATTGGTCTATGATCTGACTGATTTGATCAGCGGTGTTTACTTCAAGAGTTACTCTAACCTTTCCAGGATTCAGCGAATGGAGTGGAACAACCGGGCAATGTCAACCCTCC
ATGCTATTTTCATCACAGCAGCATCATTGTACATGGTGTTTTTGTCTGATCTCTATTCGGACCGATATTTTGGCTTTATTACCTTTCGTAGTTCGACAATATCGACATTT
TGCCTGGGATTGCAACCAGCAACCTGCAACACCAACCATTATATCCAGAATTGA
mRNA sequenceShow/hide mRNA sequence
TATTAATGATGTATATGGAGGCATTGCGTGGATGGTATATAAGAGGGCTTCTCTGGAATCTTCGTACCGTGGTGGTTAACGCCAACGAGCGCAGCGTAGCGCAAGAAAGG
AAGAGACTGAAACTTCGTATTGTTTTGTGCGTTGCTTTGGGCCCAATCACCTCACCTCACCTCACCCAAATCCTTCTCTCTCTCCTTCTTCCATATCTAACAGAAATTTT
CATATTTCTATAGTCCTCTCATCAATTCGTTCTCTTATTTCTTCCTCATTTTGATTTTCATTTTCCACGATTCTACTACTTTTTCCTCTATCTACGCAGTCGTGATTGGT
TGACAAGTTTTCTCTGCGCGTCGCGGCGTTTTCTGGCGATTTTCCGACAGTTATAAAGAGGTAGAGAAGAAGTTAAATAATTTGGAGGAATTGGGCCTCTTGCTATTTCT
TTTTGAAAACGTGGCATGCTGTAACCCCAGATTGAAACAAGCAATCATGTCACTGAAGTCATATCAAAGCCAGGCCGAGCAACTACTTAAGTATCTTGTACTATCAGATC
CTGTTGTACCATACATTTCCATTCCTGCAGGCATACTTGCTAGCAAATTGGTCTATGATCTGACTGATTTGATCAGCGGTGTTTACTTCAAGAGTTACTCTAACCTTTCC
AGGATTCAGCGAATGGAGTGGAACAACCGGGCAATGTCAACCCTCCATGCTATTTTCATCACAGCAGCATCATTGTACATGGTGTTTTTGTCTGATCTCTATTCGGACCG
ATATTTTGGCTTTATTACCTTTCGTAGTTCGACAATATCGACATTTTGCCTGGGATTGCAACCAGCAACCTGCAACACCAACCATTATATCCAGAATTGA
Protein sequenceShow/hide protein sequence
MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVYDLTDLISGVYFKSYSNLSRIQRMEWNNRAMSTLHAIFITAASLYMVFLSDLYSDRYFGFITFRSSTISTF
CLGLQPATCNTNHYIQN