; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G013880 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G013880
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L27
Genome locationCmo_Chr01:10954119..10954526
RNA-Seq ExpressionCmoCh01G013880
SyntenyCmoCh01G013880
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001141 - Ribosomal protein L27e
IPR005824 - KOW
IPR008991 - Translation protein SH3-like domain superfamily
IPR018262 - Ribosomal protein L27e, conserved site
IPR038655 - Ribosomal protein L27e superfamily
IPR041991 - Eukaryotic Ribosomal Protein L27, KOW domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608000.1 60S ribosomal protein L27-3, partial [Cucurbita argyrosperma subsp. sororia]1.2e-6799.26Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

XP_008464678.1 PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo]3.0e-6697.78Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

XP_022940098.1 60S ribosomal protein L27-3-like [Cucurbita moschata]4.2e-68100Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

XP_022981139.1 60S ribosomal protein L27-like [Cucurbita maxima]1.8e-6697.78Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSK SKVAA+KEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

XP_023523697.1 60S ribosomal protein L27-like [Cucurbita pepo subsp. pepo]5.1e-6697.04Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSK SKV A+KEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

TrEMBL top hitse value%identityAlignment
A0A0A0L310 60S ribosomal protein L271.2e-6595.56Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAV+VLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKV+RKDS KKT KKSRVKAFIKL NYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

A0A1S3CNL3 60S ribosomal protein L271.4e-6697.78Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

A0A5A7SSA5 60S ribosomal protein L271.4e-6697.78Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS KKT KKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

A0A6J1FNC2 60S ribosomal protein L272.0e-68100Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

A0A6J1J143 60S ribosomal protein L278.5e-6797.78Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVN DCL
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSK SKVAA+KEIKKRLEDRFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

SwissProt top hitse value%identityAlignment
P41101 60S ribosomal protein L279.7e-5275.54Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVN
        M KF+KPNKAVI+LQG++AGRKAVIVR FD+GTRDRPYGHCLVAG+ +YP KVIRKDS KK  KKSRVKAFIKLVNY HIMPTRYTLD DL    KDVVN
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDL----KDVVN

Query:  VDCLQSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
         D LQ++  KV A +  K RL +RFKTGKNRWFFTKLRF
Subjt:  VDCLQSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

P51419 60S ribosomal protein L27-31.8e-5881.48Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FDDG RDRPYGHCLVAG+KKYPSKVIRKDS KKTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSK  KVAA KE K +LE+RFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

Q05462 60S ribosomal protein L274.1e-5881.48Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+KPNKAVI+LQGR+AG+KAVIV+ FDDGTR++PYGHCLVAG+KK+PSKVI+KDS KKTAKKSRVKAF+KLVNYQH+MPTRYTLDVDLKD V  D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSK  KV A KE KK LE+RFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

Q8LCL3 60S ribosomal protein L27-22.2e-5679.26Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FDDGT DR YGHCLVAG+KKYPSKVIRKDS KKTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        +SK  KV A KE K +LE+RFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

Q9SKX8 60S ribosomal protein L27-11.1e-5273.33Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVK +KP KAVI+LQGR+ G+KAVIV++FDDGT ++ YGHCLVAG+KKYPSKVIRKDS KKTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
         SK  KV A KE K + E+RFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

Arabidopsis top hitse value%identityAlignment
AT2G32220.1 Ribosomal L27e protein family8.1e-5473.33Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVK +KP KAVI+LQGR+ G+KAVIV++FDDGT ++ YGHCLVAG+KKYPSKVIRKDS KKTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D +
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
         SK  KV A KE K + E+RFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

AT3G22230.1 Ribosomal L27e protein family1.6e-5779.26Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FDDGT DR YGHCLVAG+KKYPSKVIRKDS KKTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        +SK  KV A KE K +LE+RFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

AT4G15000.1 Ribosomal L27e protein family1.3e-5981.48Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FDDG RDRPYGHCLVAG+KKYPSKVIRKDS KKTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF
        QSK  KVAA KE K +LE+RFKTGKNRWFFTKLRF
Subjt:  QSKVSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

AT4G15000.2 Ribosomal L27e protein family7.6e-5279.67Show/hide
Query:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL
        MVKF+K NKAVI+LQGR+AG+KAVI+++FDDG RDRPYGHCLVAG+KKYPSKVIRKDS KKTAKKSRVK FIKLVNYQH+MPTRYTLDVDLK+V  +D L
Subjt:  MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCL

Query:  QSKVSKVAASKEIKKRLEDRFKT
        QSK  KVAA KE K +LE+RFKT
Subjt:  QSKVSKVAASKEIKKRLEDRFKT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAAATTTATAAAGCCGAACAAAGCAGTTATTGTTCTCCAAGGCCGATTCGCCGGGCGTAAGGCTGTGATTGTACGCAACTTCGATGACGGAACCCGCGATCGGCC
CTATGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAAGTGATTCGTAAAGATTCGACGAAGAAGACGGCGAAGAAATCGAGAGTGAAGGCTTTCATCAAGC
TTGTGAACTACCAGCACATAATGCCGACAAGGTACACGCTCGATGTTGATCTCAAGGATGTGGTTAATGTGGATTGTTTGCAGTCGAAGGTCTCGAAGGTCGCGGCTTCG
AAGGAGATCAAGAAGAGGTTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTTACCAAGCTTAGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGAAATTTATAAAGCCGAACAAAGCAGTTATTGTTCTCCAAGGCCGATTCGCCGGGCGTAAGGCTGTGATTGTACGCAACTTCGATGACGGAACCCGCGATCGGCC
CTATGGCCATTGTTTGGTTGCAGGGATGAAGAAGTACCCGAGCAAAGTGATTCGTAAAGATTCGACGAAGAAGACGGCGAAGAAATCGAGAGTGAAGGCTTTCATCAAGC
TTGTGAACTACCAGCACATAATGCCGACAAGGTACACGCTCGATGTTGATCTCAAGGATGTGGTTAATGTGGATTGTTTGCAGTCGAAGGTCTCGAAGGTCGCGGCTTCG
AAGGAGATCAAGAAGAGGTTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTTACCAAGCTTAGGTTCTGA
Protein sequenceShow/hide protein sequence
MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTKKTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAAS
KEIKKRLEDRFKTGKNRWFFTKLRF