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CmoCh01G014190 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G014190
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA topoisomerase 2-binding protein 1 isoform X2
Genome locationCmo_Chr01:11136871..11143091
RNA-Seq ExpressionCmoCh01G014190
SyntenyCmoCh01G014190
Gene Ontology termsGO:0016853 - isomerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608031.1 hypothetical protein SDJN03_01373, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4265.79Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFRIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGI
        MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSR+G K RGS REGVQF RIEFLLLGGSS      + V+              W    G 
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFRIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGI

Query:  -RKLYLVQQFQLHNFEITLHVPDVAAAIENLLEQTRAERKEDVRILILEMGA
         R L   ++    +  +TLHVPDVAAAIEN LEQTRAERKEDVRILIL  G+
Subjt:  -RKLYLVQQFQLHNFEITLHVPDVAAAIENLLEQTRAERKEDVRILILEMGA
KAG7031656.1 hypothetical protein SDJN02_05697 [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2543.01Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFR--------------------------------------IEF
        MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSR+G K RGS REGVQF R                                      ++ 
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFR--------------------------------------IEF

Query:  LL------------LGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGI-RKLYLVQQFQLHNFEITLHVPDVAAAIENLLEQTR
        L             +   S+  F    V+   +  +       W    G  R L   ++    +  +TLHVPDVAAAIEN LEQTR
Subjt:  LL------------LGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGI-RKLYLVQQFQLHNFEITLHVPDVAAAIENLLEQTR
XP_022936988.1 DNA topoisomerase 2-binding protein 1-A isoform X2 [Cucurbita moschata]2.0e-1176Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
XP_022941443.1 uncharacterized protein LOC111446737 [Cucurbita moschata]8.4e-5085.59Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF-----------------RIEFLLLGGSSVRAFMCKRVQTASS
        MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF                 RIEFLLLGGSSVRAFMCKRVQTASS
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF-----------------RIEFLLLGGSSVRAFMCKRVQTASS

Query:  TGFYLLPCYGWCENSGIR
        TGFYLLPCYGWCENSGIR
Subjt:  TGFYLLPCYGWCENSGIR
XP_022976695.1 DNA topoisomerase 2-binding protein 1 isoform X1 [Cucurbita maxima]2.0e-1176Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
TrEMBL top hitse value%identityAlignment
A0A6J1F9V4 DNA topoisomerase 2-binding protein 1 isoform X19.8e-1276Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
A0A6J1FES7 DNA topoisomerase 2-binding protein 1-A isoform X29.8e-1276Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
A0A6J1FS45 uncharacterized protein LOC1114467374.1e-5085.59Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF-----------------RIEFLLLGGSSVRAFMCKRVQTASS
        MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF                 RIEFLLLGGSSVRAFMCKRVQTASS
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFF-----------------RIEFLLLGGSSVRAFMCKRVQTASS

Query:  TGFYLLPCYGWCENSGIR
        TGFYLLPCYGWCENSGIR
Subjt:  TGFYLLPCYGWCENSGIR
A0A6J1IHL3 DNA topoisomerase 2-binding protein 1-A isoform X29.8e-1276Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
A0A6J1IK64 DNA topoisomerase 2-binding protein 1 isoform X19.8e-1276Show/hide
Query:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
        ML PKPFAG NVFVS NLVA EIF    DALKQNGA+VF+CCDP+RNG K
Subjt:  MLNPKPFAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNGRK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G77320.1 transcription coactivators2.2e-0859.52Show/hide
Query:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG
        F G NVF+S NLV  E+F    DA K NGA++F+CCDPSR+G
Subjt:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG
AT1G77320.2 transcription coactivators2.2e-0859.52Show/hide
Query:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG
        F G NVF+S NLV  E+F    DA K NGA++F+CCDPSR+G
Subjt:  FAGGNVFVSCNLVAQEIF----DALKQNGADVFICCDPSRNG

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATCTTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTG
TTGCGATCCTTCTCGAAACGGGCGAAAATTTCGAGGATCTTTGCGCGAAGGTGTGCAATTTTTTAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCA
TGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTGCTATGGATGGTGTGAAAATTCTGGCATCCGAAAGCTGTATCTTGTTCAACAGTTCCAG
CTCCATAACTTTGAAATAACTTTACATGTTCCTGATGTTGCTGCTGCAATTGAGAACTTGTTGGAGCAGACAAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACT
GGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGTCTCAGGCCATCAAGAGAGTGA
mRNA sequenceShow/hide mRNA sequence
TCCTCTCTCTCTCGTCCAAGTTTGATCGAGGGAGAAAGTTGACGAAGCAACGGCCGAGATGCTGAATCCGAAGCCCTTCGCCGGAGGCAACGTGTTCGTGTCCTGCAATC
TTGTTGCTCAAGAGATATTTGATGCTCTGAAGCAGAATGGGGCTGACGTCTTCATCTGTTGCGATCCTTCTCGAAACGGGCGAAAATTTCGAGGATCTTTGCGCGAAGGT
GTGCAATTTTTTAGAATTGAATTTCTGCTATTGGGGGGGTCCTCAGTGCGTGCCTTCATGTGCAAAAGAGTACAGACCGCTTCCTCAACAGGATTTTACTTGTTGCCTTG
CTATGGATGGTGTGAAAATTCTGGCATCCGAAAGCTGTATCTTGTTCAACAGTTCCAGCTCCATAACTTTGAAATAACTTTACATGTTCCTGATGTTGCTGCTGCAATTG
AGAACTTGTTGGAGCAGACAAGAGCTGAAAGAAAAGAAGACGTTAGAATCCTAATACTGGAGATGGGAGCGGAGGCATATATGGTGGTTTTTGTGAAACACAAACCGAGT
CTCAGGCCATCAAGAGAGTGAAGTCCAACAGTCCTTAGATTCATGTCCCTCGCATTGCCCTGACAGCCTGAAACCTTGGTTCCTTTGGAAGGAACTTCTGCTCAGCATAA
ATCGACATGTAGTCTCCAAACACAAACTTGGGATATCCTTTTTCCACCTCCTGGTTTGCTTTATTCACCAGCTTTGGTGCCGGAGCTATGATGGCTTCCATTGATGGGTT
GTAAAACGAAGCAAGGGATCTCCTATTCCCATTTGGGGAGGGCAGAACCCGGTGCCAAACACTCTTGTATCTTCCATTGCTCAGGACCTCAATCTGATCACCTGTGTTGA
TGACTATGGAGTTCGGCAATGGCTGGACATCTATCCACTGCCCATCTTTCAGGATTTGAAGGCCTCCCACCTCGTCGTCCTGGAAGAGCAAGATGACACCACCAGCATCG
GTGTGCGCACGGAGGCCGTTCACCAACTCCGGGTGTGGGCATGGTGGGTAGTGACTGACTTTGGTTCCAAAGAAGGCCTTGTCCAGCCCATCGCCACCATTGAAGGCAGC
CTTTATGTATCCCTCAGGTAAACCCAAGTTCTCATCCATCACTGCCATCACCTTTGCAGCTAGCTTCTTCAGCTCCGATCTATACTCTGCCATGGTTTCCCTGCCACAAT
ATTCTGTAGGTGCATGCTTACTTGAAGCCAGGAATGTTGGAGGGCCATTCGTTGTTATCATGGAGAAGGAAGACATCTTCCCAATCAAGATTTTCCAGCTTCTCGCCGCT
CTTGCGTTCCAGCAAATCATTCAGGAGCTTCACAGGAGCTCTTCTGGAATCCCATGGTTCACCAGCTGAAATTCAGATTTACTGATACCGATGGTAAACTCGTGGTCGTG
GCATAATTCTTGTTAAGCTGGCGAAGTGGAATTACGCACCCCTCAACCGAGGTAGTCTCTAATCCTTCTAAATGTTTATGATATCGTCAAAATTTGAATTTTCTTTTAGG
TGGGTTTACTATGCTATCACGTTTAATCAATCAATAGGAAGGGTGTAATCAAGCGTTTTTAAATAGTAAGGGACTAATTTAAAACTTTTTAAAAGTATAGGATTAAATTG
AAATATTACCTAAATATTAAGAACTAAAATGTAGCCCTAAATCATTGTCACATGTGGCAAAAACCAAGCAAATGATAATGATATTAATCTTACTTAAAACATAAATCTAT
GCCGACTACCGTTGATTATGTTGACTTTTGATCTTCTAGGTCATAACTTTGACTCTCACATGGATACGCTTTTGATTATCAATGGTTTACCTAAATATTTAATTACATCT
TACACTAATTTGAAGGCATAGTTTGTGGGTTAAGTAAAATAGGCTGCATCGTATCATGGC
Protein sequenceShow/hide protein sequence
MLNPKPFAGGNVFVSCNLVAQEIFDALKQNGADVFICCDPSRNGRKFRGSLREGVQFFRIEFLLLGGSSVRAFMCKRVQTASSTGFYLLPCYGWCENSGIRKLYLVQQFQ
LHNFEITLHVPDVAAAIENLLEQTRAERKEDVRILILEMGAEAYMVVFVKHKPSLRPSRE