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CmoCh01G014270 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G014270
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionnuclear receptor subfamily 4 group A member 3-like
Genome locationCmo_Chr01:11172447..11173783
RNA-Seq ExpressionCmoCh01G014270
SyntenyCmoCh01G014270
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608039.1 hypothetical protein SDJN03_01381, partial [Cucurbita argyrosperma subsp. sororia]1.3e-7094.04Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
        MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLH FPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRW S+QSKLAEPEQVSVGCFSSPLPNRKASKIV
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV

Query:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVS---SSSLSSYQSSPLKT
        NRKPEPD ASELETLPRWSVSSKKSISPFRNSVS   SSSLSSYQSSP  T
Subjt:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVS---SSSLSSYQSSPLKT

XP_022940016.1 uncharacterized protein LOC111445775 [Cucurbita moschata]4.0e-7598.65Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
        MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV

Query:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSSSSLSSYQSSPLKT
        NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSSSSLSSYQSSP  T
Subjt:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSSSSLSSYQSSPLKT

XP_022981067.1 uncharacterized protein LOC111480325 [Cucurbita maxima]3.3e-6991.45Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
        MDVDEFYRQPAAVPFKWEIKPGVPRNHH LH FPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSS+QSKLAEPEQVSVGCFSSPLPNRKA+KI+
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV

Query:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS----SSLSSYQSSPLKT
        NRKPEPD ASELETLPRWS+SSKKSISPFRNSVSS    SSLSSYQSSP  T
Subjt:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS----SSLSSYQSSPLKT

XP_023525665.1 uncharacterized protein LOC111789202 [Cucurbita pepo subsp. pepo]1.0e-7093.38Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
        MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLH FPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLA+PEQV VGCFSSPLPNRKA+KIV
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV

Query:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVS---SSSLSSYQSSPLKT
        NRKPEPDYASELETLPRWSVSSKKSISPFRNSVS   SSS SSYQSSP  T
Subjt:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVS---SSSLSSYQSSPLKT

XP_038899347.1 uncharacterized protein LOC120086669 [Benincasa hispida]1.5e-4569.03Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHS-PQQHKKLKPPPAVTATQFHRSSNSL----RTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRK
        MDVDEFYRQPAAVPFKWEIKPGVP+NHHRL   PTHS PQ H+KLKPPP+V  + F   SNSL    RTRSDRW     + ++PEQVS GCF SPLPNRK
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHS-PQQHKKLKPPPAVTATQFHRSSNSL----RTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRK

Query:  ASKIVNRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS--SSLSSYQSSPLKT
        ++K ++R PEPDY+S LE+L RWSVSS+KSISPFR SVSS  SS SSY SSP  T
Subjt:  ASKIVNRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS--SSLSSYQSSPLKT

TrEMBL top hitse value%identityAlignment
A0A0A0KY52 Uncharacterized protein6.5e-3165.6Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQH--KKLKPPPAVTATQFHRSSNSL----RTRSDRWSSTQSKLAEPEQV-SVGCFSSPLPN
        MD DEFYRQPAAVPFKWEIKPGVPRNHHRL   PTHSP QH  +KLKPPPAV  + F    NSL    RT+S+RW   +S     EQV S GCF SPLPN
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQH--KKLKPPPAVTATQFHRSSNSL----RTRSDRWSSTQSKLAEPEQV-SVGCFSSPLPN

Query:  RKASKIVNRK-PEPDYASELETLPR
        RK+ K V+RK PEPDY+S+L+TL R
Subjt:  RKASKIVNRK-PEPDYASELETLPR

A0A1S3BAM4 uncharacterized protein LOC1034876079.6e-4368.55Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQH--KKLKPPPAVTATQFHRSSNSL----RTRSDRWSSTQSKLAEPEQV-SVGCFSSPLPN
        MD DEFYR+PAAVPFKWEIKPGVPRNHHR  Q PTHSP QH  +KLKPPPAV  + F   SNSL    RTRSDRW   +S     EQV S GCF SPLPN
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQH--KKLKPPPAVTATQFHRSSNSL----RTRSDRWSSTQSKLAEPEQV-SVGCFSSPLPN

Query:  RKASKIVNRK-PEPDYASELETLPRWSVSSKKSISPFRNSVSS---SSLSSYQSSPLKT
        RK+ K ++RK PEPDY+S+L+TL RWSVSS+KSISPFR SVSS   SS SSYQSSP  T
Subjt:  RKASKIVNRK-PEPDYASELETLPRWSVSSKKSISPFRNSVSS---SSLSSYQSSPLKT

A0A6J1BQH3 uncharacterized protein DKFZp434B061-like4.8e-4265.62Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSS--------NSLRTRSDRWSSTQSKLAEPEQVS--VGCFSSP
        MD DEFYR+PAAVPFKWEIKPGVPR HHRL   P+  PQ   KLKPPP V  + F R S        +S RTRSDRW   +S LAEP QVS   GCF SP
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSS--------NSLRTRSDRWSSTQSKLAEPEQVS--VGCFSSP

Query:  LPNRKASKIVNRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS--SSLSSYQSSPLKT
         PNRK+ K +NRKPEP+Y +ELETL RWSVSS+KSISPFR+SVSS  SS SSYQSSP  T
Subjt:  LPNRKASKIVNRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS--SSLSSYQSSPLKT

A0A6J1FHC7 uncharacterized protein LOC1114457751.9e-7598.65Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
        MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV

Query:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSSSSLSSYQSSPLKT
        NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSSSSLSSYQSSP  T
Subjt:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSSSSLSSYQSSPLKT

A0A6J1ISY3 uncharacterized protein LOC1114803251.6e-6991.45Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV
        MDVDEFYRQPAAVPFKWEIKPGVPRNHH LH FPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSS+QSKLAEPEQVSVGCFSSPLPNRKA+KI+
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIV

Query:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS----SSLSSYQSSPLKT
        NRKPEPD ASELETLPRWS+SSKKSISPFRNSVSS    SSLSSYQSSP  T
Subjt:  NRKPEPDYASELETLPRWSVSSKKSISPFRNSVSS----SSLSSYQSSPLKT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G21695.1 hydroxyproline-rich glycoprotein family protein1.0e-0431.78Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKP------PPAVTATQFHRSSNSLRTRSDRWS----STQSKLAEPEQVSVGCFSSP
        +D D+ +++P AVPFKWEI+PGVP+            P    KL P      PP+ + +    SS    +RS   S        KL  P      C +SP
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKP------PPAVTATQFHRSSNSLRTRSDRWS----STQSKLAEPEQVSVGCFSSP

Query:  LPNRKAS
         P  ++S
Subjt:  LPNRKAS

AT1G77400.1 CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789)8.4e-0727.52Show/hide
Query:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSP-QQHKKLKP-------------PPAVTATQFHRSSNSL------------------------
        +DVD+ +++P  +PF WEI+PGVP+   R+ Q    +P Q  KKL P             PPA++       SNS                         
Subjt:  MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSP-QQHKKLKP-------------PPAVTATQFHRSSNSL------------------------

Query:  ------------------RTRSDRWSSTQSKLAEPEQ----------VSVGCFSSP---LPNRKAS----KIVNRKPEPDYASELETLPRWSVSSKKSIS
                          R  S+RW   +     PE              GCF SP   L   K+     K  +R     Y S++ET+  W+VSS++S+S
Subjt:  ------------------RTRSDRWSSTQSKLAEPEQ----------VSVGCFSSP---LPNRKAS----KIVNRKPEPDYASELETLPRWSVSSKKSIS

Query:  PFRNSVSSSSLSSYQSSP
        P R     SS SS + SP
Subjt:  PFRNSVSSSSLSSYQSSP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACGTTGATGAATTTTACCGGCAACCGGCTGCCGTTCCTTTCAAATGGGAGATCAAACCCGGCGTCCCCAGGAACCACCACCGCCTCCACCAGTTCCCCACTCACTC
TCCTCAACAACACAAGAAGCTAAAGCCTCCTCCTGCTGTAACTGCAACCCAATTCCACCGTTCTTCCAACTCCCTCCGAACCCGGTCCGACCGATGGTCTTCCACCCAGT
CCAAACTTGCCGAACCCGAGCAGGTCTCGGTCGGTTGCTTCTCCTCGCCTTTGCCGAACCGGAAAGCGAGCAAGATTGTTAACAGGAAACCCGAACCGGATTACGCCTCT
GAGTTGGAGACTTTGCCGCGGTGGTCGGTTTCCAGTAAGAAGTCGATTTCGCCGTTCAGAAACTCGGTTTCGTCGTCGTCGCTTTCGTCGTACCAGTCATCGCCCCTAAA
GACAAGACGTGTCAACATATCAAGGATCTACAGACTGAAGGAAATAAGTTACGAAAAATGTGAAGTAACTCCTAATATAGGAGTAAAGACAAGGCGTGTCAATATATCGA
GGATCCTCAGACAGATTGAAGGAAGTAAGTTACGAAAAAATGTGAAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACGTTGATGAATTTTACCGGCAACCGGCTGCCGTTCCTTTCAAATGGGAGATCAAACCCGGCGTCCCCAGGAACCACCACCGCCTCCACCAGTTCCCCACTCACTC
TCCTCAACAACACAAGAAGCTAAAGCCTCCTCCTGCTGTAACTGCAACCCAATTCCACCGTTCTTCCAACTCCCTCCGAACCCGGTCCGACCGATGGTCTTCCACCCAGT
CCAAACTTGCCGAACCCGAGCAGGTCTCGGTCGGTTGCTTCTCCTCGCCTTTGCCGAACCGGAAAGCGAGCAAGATTGTTAACAGGAAACCCGAACCGGATTACGCCTCT
GAGTTGGAGACTTTGCCGCGGTGGTCGGTTTCCAGTAAGAAGTCGATTTCGCCGTTCAGAAACTCGGTTTCGTCGTCGTCGCTTTCGTCGTACCAGTCATCGCCCCTAAA
GACAAGACGTGTCAACATATCAAGGATCTACAGACTGAAGGAAATAAGTTACGAAAAATGTGAAGTAACTCCTAATATAGGAGTAAAGACAAGGCGTGTCAATATATCGA
GGATCCTCAGACAGATTGAAGGAAGTAAGTTACGAAAAAATGTGAAGTAA
Protein sequenceShow/hide protein sequence
MDVDEFYRQPAAVPFKWEIKPGVPRNHHRLHQFPTHSPQQHKKLKPPPAVTATQFHRSSNSLRTRSDRWSSTQSKLAEPEQVSVGCFSSPLPNRKASKIVNRKPEPDYAS
ELETLPRWSVSSKKSISPFRNSVSSSSLSSYQSSPLKTRRVNISRIYRLKEISYEKCEVTPNIGVKTRRVNISRILRQIEGSKLRKNVK