CuGenDBv2

Gene ID	CmoCh01G014480
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Genome location	Cmo_Chr01:11291708..11294096
RNA-Seq Expression	CmoCh01G014480
Synteny	CmoCh01G014480
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608059.1 putative protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

3.5e-88

97.62

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Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        MTQSPDFGGDYTDGTHH QSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKC NHIGNA+TSHTFSTPLVSDGSDSS PSEVSRCTKYEVKIRALQPSSSHEFDPSVI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

XP_022135315.1 uncharacterized protein At4g08330, chloroplastic [Momordica charantia]

5.4e-73

85.71

Show/hide

Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        M QSP  G DY DGTH   SFS+ SLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRR KLLCRKC NHIGNA TS   S PLVSDGSDSS P EVSRC KYEVKIRALQPSSSH+F P VI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

XP_022940003.1 uncharacterized protein At4g08330, chloroplastic [Cucurbita moschata]

4.4e-91

100

Show/hide

Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

XP_022981061.1 uncharacterized protein At4g08330, chloroplastic [Cucurbita maxima]

1.2e-88

97.62

Show/hide

Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKC NHIGNA+TSHTFSTPLVSDGSDSS PSEV+RCTKYEVKIRALQPSSSHEFDPSVI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

XP_023523702.1 uncharacterized protein At4g08330, chloroplastic [Cucurbita pepo subsp. pepo]

3.5e-88

97.02

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Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        MTQSPDFGGDYTDGTHHVQSFSSTSLYS+SSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKC NHIGNA+TSH+FSTPLVSDGSDSS PSEVSRCTKYEVKIRALQPSSSHEFDPSVI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L375 Uncharacterized protein

2.2e-72

84.02

Show/hide

Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        M QSP FG DY  GT HVQSFSS SL+ SSSRRDVYYSCGACGYELNLSS NRNTSTIGSKYGKSIKRGIISFLN+D+SRFTQVDELQCVPHFSK+SWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSD-SSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKC N+IGNA ++HT S+PLVSDGSD SS P+EVSRC KYEVKIRALQPSSS+EF+PS+I
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSD-SSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

A0A5D3D741 Uncharacterized protein

2.9e-72

83.43

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Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        M QSP FG DY  GT H+QSFSS SL+ SSSRRDVYYSCGACGYELNLSS NRNTSTIGSKYGKSIKRGIISFLN+D+SRFTQVDELQCVPHFSK+SWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSD-SSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKC N+IGNA ++HT S+PLVSDGSD SS P+EVSRC KYEVKIRALQPSSS+EF+PS+I
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSD-SSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

A0A6J1C0S6 uncharacterized protein At4g08330, chloroplastic

2.6e-73

85.71

Show/hide

Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        M QSP  G DY DGTH   SFS+ SLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVD+SRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRR KLLCRKC NHIGNA TS   S PLVSDGSDSS P EVSRC KYEVKIRALQPSSSH+F P VI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

A0A6J1FN39 uncharacterized protein At4g08330, chloroplastic

2.1e-91

100

Show/hide

Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

A0A6J1IVF4 uncharacterized protein At4g08330, chloroplastic

5.8e-89

97.62

Show/hide

Query:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
        MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL
Subjt:  MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGL

Query:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI
        FRRRIKLLCRKC NHIGNA+TSHTFSTPLVSDGSDSS PSEV+RCTKYEVKIRALQPSSSHEFDPSVI
Subjt:  FRRRIKLLCRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

SwissProt top hits

e value

%identity

Alignment

Q9STN5 Uncharacterized protein At4g08330, chloroplastic

1.4e-44

60.53

Show/hide

Query:  GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLL
        G +     +  SFSS+S  SSSS R V YSCG+CGYELNLSS+NR TSTIGSKYGKS+K GIISF N+D+ RF+QVDE QC+PHFS++SWGLFR R KLL
Subjt:  GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLL

Query:  CRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSS
        CRKC N+IGNA         LV+  SD + P  +   TKY+++IR+LQPSS+
Subjt:  CRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSS

Arabidopsis top hits

e value

%identity

Alignment

AT4G08330.1 unknown protein

1.0e-45

60.53

Show/hide

Query:  GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLL
        G +     +  SFSS+S  SSSS R V YSCG+CGYELNLSS+NR TSTIGSKYGKS+K GIISF N+D+ RF+QVDE QC+PHFS++SWGLFR R KLL
Subjt:  GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLL

Query:  CRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSS
        CRKC N+IGNA         LV+  SD + P  +   TKY+++IR+LQPSS+
Subjt:  CRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSS

AT4G08330.2 unknown protein.

1.9e-36

53.95

Show/hide

Query:  GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLL
        G +     +  SFSS+S  SSSS R V           N SS+NR TSTIGSKYGKS+K GIISF N+D+ RF+QVDE QC+PHFS++SWGLFR R KLL
Subjt:  GDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLL

Query:  CRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSS
        CRKC N+IGNA         LV+  SD + P  +   TKY+++IR+LQPSS+
Subjt:  CRKCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACGCAGTCGCCGGATTTCGGAGGCGATTACACCGACGGAACTCACCACGTACAGTCCTTTTCGTCGACCTCTCTCTACTCTTCTTCGTCTCGCCGAGATGTTTATTA
CAGCTGTGGTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATACATCGACCATTGGCTCTAAATATGGTAAGTCGATAAAGCGAGGGATCATATCGTTTC
TAAACGTCGACGATAGCAGATTTACTCAGGTTGATGAACTTCAGTGTGTGCCTCATTTCTCGAAGCACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGA
AAGTGTGAAAACCATATTGGAAATGCTGACACAAGCCACACTTTCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCTTTCCCCAGTGAAGTCTCTAGGTGTACGAA
ATATGAAGTTAAAATCCGTGCCTTACAACCCTCATCTTCACACGAATTTGACCCCTCAGTTATTTAA

mRNA sequence

Show/hide mRNA sequence

GTTGTTCTTCCAATTCACCACACTTCGTCTCTTAGAAACTGCGATTTTTCTCTTAGGTCACATCTTCTGTTATTGTTTCGAGTTCGCTAAGATTAACTCCGAACTTGTTC
ATTATTGTTGTTTGTAACCGCGATTCGTCGTTTACGACCTCGAAATCTCCGTCGACCGTTGCAGCCAGCGTCGGAGTCAGTGTCGTATTCTGAACCGGAGGAATGACGCA
GTCGCCGGATTTCGGAGGCGATTACACCGACGGAACTCACCACGTACAGTCCTTTTCGTCGACCTCTCTCTACTCTTCTTCGTCTCGCCGAGATGTTTATTACAGCTGTG
GTGCTTGTGGATATGAACTGAACTTGAGCTCTTCTAACCGCAATACATCGACCATTGGCTCTAAATATGGTAAGTCGATAAAGCGAGGGATCATATCGTTTCTAAACGTC
GACGATAGCAGATTTACTCAGGTTGATGAACTTCAGTGTGTGCCTCATTTCTCGAAGCACTCTTGGGGTCTGTTTCGTCGAAGAATCAAACTACTGTGTCGAAAGTGTGA
AAACCATATTGGAAATGCTGACACAAGCCACACTTTCTCCACCCCACTTGTTTCAGATGGATCAGATTCATCTTTCCCCAGTGAAGTCTCTAGGTGTACGAAATATGAAG
TTAAAATCCGTGCCTTACAACCCTCATCTTCACACGAATTTGACCCCTCAGTTATTTAAACAACGGGACAAGGCTTTACTGAATGGGTCCTCCTCCGAGTGTGCTATTTA
CTTGTGAATAAGAATTGGGTCTGAAATGGAAGCAAGTGTAATTGAAAGGATTCACAGCTATTGTTCCTGCCAACTAAAGGATGATTTATACGTGGGAGTTGTTTCGAAGC
TACTGATGTTTTTGCCTTATTTTTCGTTTTGCAAAGAAGCATTGTTTAATG

Protein sequence

Show/hide protein sequence

MTQSPDFGGDYTDGTHHVQSFSSTSLYSSSSRRDVYYSCGACGYELNLSSSNRNTSTIGSKYGKSIKRGIISFLNVDDSRFTQVDELQCVPHFSKHSWGLFRRRIKLLCR
KCENHIGNADTSHTFSTPLVSDGSDSSFPSEVSRCTKYEVKIRALQPSSSHEFDPSVI

CmoCh01G014480 (gene) of Cucurbita moschata (Rifu) v1 genome