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CmoCh01G015420 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G015420
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNeurochondrin isoform X1
Genome locationCmo_Chr01:11895850..11896614
RNA-Seq ExpressionCmoCh01G015420
SyntenyCmoCh01G015420
Gene Ontology termsNA
InterPro domainsIPR008709 - Neurochondrin


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591552.1 Neurochondrin, partial [Cucurbita argyrosperma subsp. sororia]8.4e-1889.47Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSSRGLAAVV  KCLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
TYK19981.1 neurochondrin isoform X1 [Cucumis melo var. makuwa]4.1e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
XP_008452892.1 PREDICTED: neurochondrin isoform X1 [Cucumis melo]4.1e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
XP_008452894.1 PREDICTED: neurochondrin isoform X3 [Cucumis melo]4.1e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
XP_008452895.1 PREDICTED: neurochondrin isoform X4 [Cucumis melo]4.1e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
TrEMBL top hitse value%identityAlignment
A0A1S3BUW9 neurochondrin isoform X42.0e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
A0A1S3BUZ3 neurochondrin isoform X32.0e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
A0A1S3BW48 neurochondrin isoform X12.0e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
A0A5A7VFZ2 Neurochondrin isoform X12.0e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
A0A5D3D8S2 Neurochondrin isoform X12.0e-1787.72Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSVEGEDEQSPFNSV FLLPMLCQITMNVEGC T VSS GLAAVVN  CLIN IHK
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G32050.1 neurochondrin family protein3.9e-1364.91Show/hide
Query:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK
        MLSV+GEDE SPF S  FLLPMLCQITMN EGC     SRG  AVV  +CLI  I +
Subjt:  MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCTCTGTAGAAGGTGAAGATGAACAGAGCCCCTTCAACTCTGTTCGCTTCTTGCTTCCCATGCTATGTCAAATAACGATGAATGTTGAAGGATGCAACACT
TATGTTTCTTCTAGAGGTCTTGCAGCTGTTGTGAATTGGAAATGCCTTATAAATTTCATTCACAAAGCATGGATGGTGGCTGGATTGACGACAATGGATCGGATC
CATATTCTCGGCTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTCTCTGTAGAAGGTGAAGATGAACAGAGCCCCTTCAACTCTGTTCGCTTCTTGCTTCCCATGCTATGTCAAATAACGATGAATGTTGAAGGATGCAACACT
TATGTTTCTTCTAGAGGTCTTGCAGCTGTTGTGAATTGGAAATGCCTTATAAATTTCATTCACAAAGCATGGATGGTGGCTGGATTGACGACAATGGATCGGATC
CATATTCTCGGCTTGTGATACAATCTTGATCGTGCTTCTCAAGAAGGAACTAGCTGAGCATCCATGTGGCGAATCATCTTTTGTTAGCCTTTTAGCAGCAGTTGC
CAAATTCGACTGGTATCTTTCTTTGATTATTGCCTTCACCTGCATGTTGAATTAGTACCTTTAATTGATGCCTCCATGTTTAAAGATACTACGTTATGTTGCCTG
CTTTATT
Protein sequenceShow/hide protein sequence
MLSVEGEDEQSPFNSVRFLLPMLCQITMNVEGCNTYVSSRGLAAVVNWKCLINFIHKAWMVAGLTTMDRIHILGL