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CmoCh01G015570 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G015570
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCoatomer subunit zeta
Genome locationCmo_Chr01:11982337..11984079
RNA-Seq ExpressionCmoCh01G015570
SyntenyCmoCh01G015570
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0006890 - retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (biological process)
GO:0006891 - intra-Golgi vesicle-mediated transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030126 - COPI vesicle coat (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR039652 - Coatomer subunit zeta


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038809.1 SNARE-like superfamily protein [Cucumis melo var. makuwa]8.1e-2293.1Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
KAG6608152.1 TSET complex member tstD, partial [Cucurbita argyrosperma subsp. sororia]4.3e-2396.55Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
XP_004136347.1 TSET complex member tstD [Cucumis sativus]8.1e-2293.1Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
XP_008466411.1 PREDICTED: uncharacterized protein LOC103503824 [Cucumis melo]8.1e-2293.1Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
XP_022941369.1 uncharacterized protein LOC111446682 [Cucurbita moschata]4.3e-2396.55Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
TrEMBL top hitse value%identityAlignment
A0A0A0LHA5 Coatomer subunit zeta3.9e-2293.1Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
A0A5A7TBS4 Coatomer subunit zeta3.9e-2293.1Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
A0A5D3E691 Coatomer subunit zeta3.9e-2293.1Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITS IKDACGKAPTERLFLDKYGKICLCLDEIVW GILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
A0A6J1FN50 Coatomer subunit zeta2.1e-2396.55Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
A0A6J1J445 Coatomer subunit zeta2.1e-2396.55Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G15370.1 SNARE-like superfamily protein5.1e-2274.14Show/hide
Query:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL
        L +AE I++IT+ +KD CGK PTER+FLDKYG+ICLCLDEIVW G+LENT+KDRIKRL
Subjt:  LQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCTTTCCTCTTCTTCAAGTGGCAGAAGTGATCTTTGTAATAACATCATTGATAAAGGATGCCTGCGGGAAAGCTCCAACCGAGCGCTTGTTTCTTGACAAATATGG
AAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGATGGGCATCTTGGAGAACACAGAGAAAGACAGGATCAAGAGGCTGGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCCTTTCCTCTTCTTCAAGTGGCAGAAGTGATCTTTGTAATAACATCATTGATAAAGGATGCCTGCGGGAAAGCTCCAACCGAGCGCTTGTTTCTTGACAAATATGG
AAAGATTTGTTTGTGTCTTGATGAAATTGTCTGGATGGGCATCTTGGAGAACACAGAGAAAGACAGGATCAAGAGGCTGGATTAG
Protein sequenceShow/hide protein sequence
MSFPLLQVAEVIFVITSLIKDACGKAPTERLFLDKYGKICLCLDEIVWMGILENTEKDRIKRLD