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CmoCh01G015730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G015730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionHistone deacetylase 18-like protein
Genome locationCmo_Chr01:12093061..12093993
RNA-Seq ExpressionCmoCh01G015730
SyntenyCmoCh01G015730
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608173.1 hypothetical protein SDJN03_01515, partial [Cucurbita argyrosperma subsp. sororia]1.8e-7299.3Show/hide
Query:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVA+ETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQVISSKFGSK
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQVISSKFGSK
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQVISSKFGSK

KAG7031813.1 hypothetical protein SDJN02_05854 [Cucurbita argyrosperma subsp. argyrosperma]5.1e-6798.51Show/hide
Query:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MG GINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVA+ETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ

XP_022940392.1 uncharacterized protein LOC111446015 [Cucurbita moschata]1.2e-57100Show/hide
Query:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
        KDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
Subjt:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV

Query:  QVISSKFGSKYCFSL
        QVISSKFGSKYCFSL
Subjt:  QVISSKFGSKYCFSL

XP_022981718.1 uncharacterized protein LOC111480783 [Cucurbita maxima]1.7e-6799.25Show/hide
Query:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGD+SVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ

XP_023524416.1 uncharacterized protein LOC111788320 [Cucurbita pepo subsp. pepo]3.9e-7598.65Show/hide
Query:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDD+GTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQVISSKFGSKYCFSL
        SLEIIVPENLPRPSQRRKWE IAFTDVENAPAVQVISSKFGSKYCFSL
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQVISSKFGSKYCFSL

TrEMBL top hitse value%identityAlignment
A0A5A7TBN7 Uncharacterized protein1.6e-4265.61Show/hide
Query:  MGLGINC-SSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVD----SRRVKISRWSDK-RKC
        M L INC SSSV LLP+ P  NSFDS+K A+L  K+D G+WR RS CALGLASLI AIE GDV +A E+ ALES PQ+VD     R  KI RWSD+ RKC
Subjt:  MGLGINC-SSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVD----SRRVKISRWSDK-RKC

Query:  AQWRANSLEIIVPENLPRPSQRRKWETIAFTDVE---NAPAVQVISSKFGSKYCFSL
        A WRA SLEIIVPENLPRPSQRRK E IA+  ++   NAP VQVISS+  S YCFSL
Subjt:  AQWRANSLEIIVPENLPRPSQRRKWETIAFTDVE---NAPAVQVISSKFGSKYCFSL

A0A6J1CAG3 uncharacterized protein LOC111009442 isoform X16.3e-5578.29Show/hide
Query:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALES--PPQVVDSRRVKISRWSDKRKCAQWR
        M L +NCS+SV LLPRAPDSNSFD+SK ARLS K+  G+W  RSRCALGLASLILAIEFG+  VA E QALES  PPQ+VDSRR+KISRWSDKRKCA WR
Subjt:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALES--PPQVVDSRRVKISRWSDKRKCAQWR

Query:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQVISSKFGSKYCFSL
        ANSLE IVPENLPRPSQRRKWET+ FT DVE NAPA+QVISS+  SKYCFSL
Subjt:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQVISSKFGSKYCFSL

A0A6J1CAH3 uncharacterized protein LOC111009442 isoform X21.5e-4878.26Show/hide
Query:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALES--PPQVVDSRRVKISRWSDKRKCAQWR
        M L +NCS+SV LLPRAPDSNSFD+SK ARLS K+  G+W  RSRCALGLASLILAIEFG+  VA E QALES  PPQ+VDSRR+KISRWSDKRKCA WR
Subjt:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALES--PPQVVDSRRVKISRWSDKRKCAQWR

Query:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQ
        ANSLE IVPENLPRPSQRRKWET+ FT DVE NAPA+Q
Subjt:  ANSLEIIVPENLPRPSQRRKWETIAFT-DVE-NAPAVQ

A0A6J1FJG9 uncharacterized protein LOC1114460156.0e-58100Show/hide
Query:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
        KDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV
Subjt:  KDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENLPRPSQRRKWETIAFTDVENAPAV

Query:  QVISSKFGSKYCFSL
        QVISSKFGSKYCFSL
Subjt:  QVISSKFGSKYCFSL

A0A6J1J2V8 uncharacterized protein LOC1114807838.4e-6899.25Show/hide
Query:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
        MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGD+SVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN
Subjt:  MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRAN

Query:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
        SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ
Subjt:  SLEIIVPENLPRPSQRRKWETIAFTDVENAPAVQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G25625.1 unknown protein2.0e-1335.71Show/hide
Query:  DSNSFDS--------SKVARLSAKDDRGTWRIRSRCALGLASLIL--AIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPE
        DSNS  S        SK++    +++    + +    LG+A+ ++   I+  DV+ +VE   ++SP + + +  V   RWSDKR C  W  NSLE IVPE
Subjt:  DSNSFDS--------SKVARLSAKDDRGTWRIRSRCALGLASLIL--AIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPE

Query:  NLPRPSQRRKWETIAFTDVENAPAVQVISSKFGSKYCFSL
        NLPRPS  R+ E +A     +AP V V+ ++     CFS+
Subjt:  NLPRPSQRRKWETIAFTDVENAPAVQVISSKFGSKYCFSL

AT2G25625.2 unknown protein3.1e-1436.69Show/hide
Query:  DSNSFDS-----SKVARLSAKDDRGTWRIRSRCA--LGLASLIL--AIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPEN
        DSNS  S        +++S + +  T   +++C+  LG+A+ ++   I+  DV+ +VE   ++SP + + +  V   RWSDKR C  W  NSLE IVPEN
Subjt:  DSNSFDS-----SKVARLSAKDDRGTWRIRSRCA--LGLASLIL--AIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPEN

Query:  LPRPSQRRKWETIAFTDVENAPAVQVISSKFGSKYCFSL
        LPRPS  R+ E +A     +AP V V+ ++     CFS+
Subjt:  LPRPSQRRKWETIAFTDVENAPAVQVISSKFGSKYCFSL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTGGGCATCAATTGTTCATCTTCAGTAGTTCTCCTTCCTCGAGCTCCCGATTCGAATTCCTTTGATTCTTCGAAAGTTGCTCGATTGTCTGCGAAGGACGATAG
AGGAACGTGGAGAATCAGAAGTCGATGCGCTTTAGGTTTAGCGAGCTTGATTCTCGCAATCGAGTTCGGTGACGTCTCCGTCGCCGTTGAAACTCAGGCTCTCGAATCGC
CGCCGCAAGTTGTAGATTCGAGGCGTGTAAAGATCTCGAGATGGAGCGACAAAAGAAAATGCGCTCAATGGCGAGCCAATTCGCTCGAGATTATCGTGCCTGAGAACCTT
CCGAGGCCGTCGCAGCGCCGGAAGTGGGAGACAATAGCATTTACGGATGTGGAGAACGCACCGGCAGTTCAAGTAATTTCTTCCAAATTTGGCTCCAAGTACTGTTTCTC
TTTATAA
mRNA sequenceShow/hide mRNA sequence
TATTATTTATTCTCTTTGACTTTACTTCTAATGAGCTCATTAAGCCTAGTGATTTTTTTGGGGTTTTATGTGCTTGAAATAATTTAGTGGGCCCAAGCCACGTGTCCAAT
TCTCCAGAGGCAGTTATTGTAAACTTCTTTTGCAGAGTGACAGTCGGTGTAACTTTATCATCTCTCGTAACCGCTTTCTTTATATAAATATCACCCCGCCCATTTTTTTC
TCTGTTGCTTGACTATTCTTTCGAGAGAAGAAAAGAAACAGAGAAATGGGTTTGGGCATCAATTGTTCATCTTCAGTAGTTCTCCTTCCTCGAGCTCCCGATTCGAATTC
CTTTGATTCTTCGAAAGTTGCTCGATTGTCTGCGAAGGACGATAGAGGAACGTGGAGAATCAGAAGTCGATGCGCTTTAGGTTTAGCGAGCTTGATTCTCGCAATCGAGT
TCGGTGACGTCTCCGTCGCCGTTGAAACTCAGGCTCTCGAATCGCCGCCGCAAGTTGTAGATTCGAGGCGTGTAAAGATCTCGAGATGGAGCGACAAAAGAAAATGCGCT
CAATGGCGAGCCAATTCGCTCGAGATTATCGTGCCTGAGAACCTTCCGAGGCCGTCGCAGCGCCGGAAGTGGGAGACAATAGCATTTACGGATGTGGAGAACGCACCGGC
AGTTCAAGTAATTTCTTCCAAATTTGGCTCCAAGTACTGTTTCTCTTTATAAATATCTATTGCCTCGCCTAGACTCAATTGTAGATACTAGCTTCTAAGTCGATTTTATC
AATCACTTCAATGGCTATTCGATGACTGCTATTATTGATCAACGTG
Protein sequenceShow/hide protein sequence
MGLGINCSSSVVLLPRAPDSNSFDSSKVARLSAKDDRGTWRIRSRCALGLASLILAIEFGDVSVAVETQALESPPQVVDSRRVKISRWSDKRKCAQWRANSLEIIVPENL
PRPSQRRKWETIAFTDVENAPAVQVISSKFGSKYCFSL