; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G015870 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G015870
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCHY-type/CTCHY-type/RING-type Zinc finger protein
Genome locationCmo_Chr01:12190674..12192378
RNA-Seq ExpressionCmoCh01G015870
SyntenyCmoCh01G015870
Gene Ontology termsGO:0006511 - ubiquitin-dependent protein catabolic process (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0005634 - nucleus (cellular component)
GO:0008270 - zinc ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR013083 - Zinc finger, RING/FYVE/PHD-type
IPR039512 - RCHY1, zinc-ribbon


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608184.1 putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma subsp. sororia]1.6e-56100Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

KAG7031826.1 putative E3 ubiquitin-protein ligase RZFP34, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-56100Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

XP_022941168.1 probable E3 ubiquitin-protein ligase RZFP34 isoform X1 [Cucurbita moschata]1.6e-56100Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

XP_022941172.1 probable E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucurbita moschata]1.6e-56100Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

XP_022982063.1 probable E3 ubiquitin-protein ligase RZFP34 isoform X2 [Cucurbita maxima]4.7e-5698.06Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQNK+VWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

TrEMBL top hitse value%identityAlignment
A0A6J1BQ41 probable E3 ubiquitin-protein ligase RZFP34 isoform X11.3e-5191Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDV+VMPCGHTIHQ+CL  MRDHFQ+ACPLCSKSVCDMSKVWEK+DMEIAATPIPEPYQNK+VWILCNDCGKTSKVQYH+VAQKCLNC+SYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

A0A6J1FKD4 probable E3 ubiquitin-protein ligase RZFP34 isoform X17.9e-57100Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

A0A6J1FLP2 probable E3 ubiquitin-protein ligase RZFP34 isoform X27.9e-57100Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

A0A6J1IY99 probable E3 ubiquitin-protein ligase RZFP34 isoform X12.3e-5698.06Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQNK+VWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

A0A6J1J3U7 probable E3 ubiquitin-protein ligase RZFP34 isoform X22.3e-5698.06Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQNK+VWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LIG
        LIG
Subjt:  LIG

SwissProt top hitse value%identityAlignment
Q5JL96 Probable E3 ubiquitin-protein ligase RZFP341.9e-3666.67Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLF+STNDVSV+PCGHTIH  CL  M +H QFACPLCSKSVCDMSK WE+ D E+A   I +   NK+V ILCNDCG TS+VQ+H++A KC  C+SYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LI
         I
Subjt:  LI

Q8VZK0 E3 ubiquitin-protein ligase MIEL11.7e-3256.86Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDS  D +VM CGHT+H  C N M    +F CP+CS+SV DMSK W++ D EI AT +P  Y++K VWILCNDC  T++V +H++ QKC +CRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LI
         I
Subjt:  LI

Q96PM5 RING finger and CHY zinc finger domain-containing protein 11.4e-2147.31Show/hide
Query:  VMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
        V+PCGH +H++C   M     + CPLC  S  DM++ W + D E+A TP+P  YQN  V ILCNDC   S VQ+H++  KC  C SYNT   G
Subjt:  VMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG

Q9CR50 RING finger and CHY zinc finger domain-containing protein 11.8e-2147.31Show/hide
Query:  VMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG
        V+PCGH +H++C   M     + CPLC  S  DM++ W + D E+A TP+P  YQN  V ILCNDC   S VQ+H++  KC  C SYNT   G
Subjt:  VMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTRLIG

Q9FFB6 E3 ubiquitin-protein ligase RZFP343.1e-3457Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDST D++V+ CGHT+H  C   M  H ++ CP+CSKS+CDMS +W+K D E+AA P+P+ Y+NK+VWILCNDCG  + V++H++A KC +C SYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Arabidopsis top hitse value%identityAlignment
AT5G18650.1 CHY-type/CTCHY-type/RING-type Zinc finger protein1.2e-3356.86Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDS  D +VM CGHT+H  C N M    +F CP+CS+SV DMSK W++ D EI AT +P  Y++K VWILCNDC  T++V +H++ QKC +CRSYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

Query:  LI
         I
Subjt:  LI

AT5G22920.1 CHY-type/CTCHY-type/RING-type Zinc finger protein2.2e-3557Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        YLFDST D++V+ CGHT+H  C   M  H ++ CP+CSKS+CDMS +W+K D E+AA P+P+ Y+NK+VWILCNDCG  + V++H++A KC +C SYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

AT5G25560.1 CHY-type/CTCHY-type/RING-type Zinc finger protein7.8e-4981Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        +LF+S NDV+V+PCGHTIHQ CL  MRDH+Q+ACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN++V ILCNDCGK ++VQYHVVAQKC NC+SYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

AT5G25560.3 CHY-type/CTCHY-type/RING-type Zinc finger protein7.8e-4981Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        +LF+S NDV+V+PCGHTIHQ CL  MRDH+Q+ACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN++V ILCNDCGK ++VQYHVVAQKC NC+SYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR

AT5G25560.4 CHY-type/CTCHY-type/RING-type Zinc finger protein7.8e-4981Show/hide
Query:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR
        +LF+S NDV+V+PCGHTIHQ CL  MRDH+Q+ACPLCSKSVCDMSKVWEKFDMEIAATP+PEPYQN++V ILCNDCGK ++VQYHVVAQKC NC+SYNTR
Subjt:  YLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKTSKVQYHVVAQKCLNCRSYNTR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATACATCTAAGAAGCAGTATCACTGTAATGGCTGTGGAATTTGTAGAATCGGGGGGCGGGAGAAATTCTTCCACTGCCATAAGTGTGTATCTGTTTGATTCGAC
AAACGACGTATCGGTGATGCCGTGTGGACACACCATCCATCAAAGTTGCTTGAATGCGATGAGAGATCACTTTCAATTTGCTTGTCCTCTCTGCTCCAAGTCCGTTTGTG
ATATGTCCAAGGTGTGGGAAAAATTTGACATGGAAATTGCAGCTACTCCAATTCCAGAGCCATACCAAAATAAAGTGGTTTGGATTCTTTGCAACGATTGCGGGAAAACG
TCGAAGGTGCAGTATCATGTTGTGGCTCAAAAATGCTTGAATTGCAGGTCCTACAACACCAGACTGATTGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGATGATACATCTAAGAAGCAGTATCACTGTAATGGCTGTGGAATTTGTAGAATCGGGGGGCGGGAGAAATTCTTCCACTGCCATAAGTGTGTATCTGTTTGATTCGAC
AAACGACGTATCGGTGATGCCGTGTGGACACACCATCCATCAAAGTTGCTTGAATGCGATGAGAGATCACTTTCAATTTGCTTGTCCTCTCTGCTCCAAGTCCGTTTGTG
ATATGTCCAAGGTGTGGGAAAAATTTGACATGGAAATTGCAGCTACTCCAATTCCAGAGCCATACCAAAATAAAGTGGTTTGGATTCTTTGCAACGATTGCGGGAAAACG
TCGAAGGTGCAGTATCATGTTGTGGCTCAAAAATGCTTGAATTGCAGGTCCTACAACACCAGACTGATTGGCTAAGGATGTGGATATGAAGGCCACATCCCCATCGTCCT
GCAACTCTGAAATGCTTCAAACCACTCGACGACAATGACGACGATGATGACGACGTTCTGCAGCCTCCTCGTTTGTTTATCTTCTTTATTTGGTTGATTTCTTGTAGTCC
ACCTCTGCCTTCTCCGTTCTTTTTGTTTGTTTCTCTTCTTTATTTGGTTGAGTTCTTGTAGTCTACTTCTGCCTTCTCCGTTCTATTTGTTGCTGTCTATATTGCTGTAT
TTGCCCCTTCGTTCGAAATAAGATGCGCGCATCGTAATCGTGTTAGTGAATTGCATTGCTTTAAAGTTCCC
Protein sequenceShow/hide protein sequence
MMIHLRSSITVMAVEFVESGGGRNSSTAISVYLFDSTNDVSVMPCGHTIHQSCLNAMRDHFQFACPLCSKSVCDMSKVWEKFDMEIAATPIPEPYQNKVVWILCNDCGKT
SKVQYHVVAQKCLNCRSYNTRLIG