CuGenDBv2

Gene ID	CmoCh01G015880
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Ribosomal protein S18
Genome location	Cmo_Chr01:12193514..12198199
RNA-Seq Expression	CmoCh01G015880
Synteny	CmoCh01G015880
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR001648 - Ribosomal protein S18 IPR001705 - Ribosomal protein L33 IPR011332 - Zinc-binding ribosomal protein IPR018264 - Ribosomal protein L33, conserved site IPR022546 - Uncharacterised protein family Ycf68 IPR036870 - Ribosomal protein S18 superfamily IPR038584 - Ribosomal protein L33 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AES88250.1 50S ribosomal protein L33 [Medicago truncatula]

5.2e-16

40.59

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP---------------------------------------------------------
        +ILEC+ C +  VNKES GISRYITQKNRHNTP+RLELRKFCP                                                         
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP---------------------------------------------------------

Query:  ------------------RKILSRRVNRLTLKQQRLITIAIKQARILSLLPFL--------NNEKQFERR
                           KILSRRVNR TLKQQRLITIAIKQARILSLLPF+        N +K++E++
Subjt:  ------------------RKILSRRVNRLTLKQQRLITIAIKQARILSLLPFL--------NNEKQFERR

KAF7068023.1 LOW QUALITY PROTEIN: hypothetical protein CFC21_073822 [Triticum aestivum]

1.2e-15

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Query:  RARPKIQLSIHSWDPGGPGGTTSAPLFSRIHTSLISIWTAISRAQ------------------TKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPIN
        + R  + L+ +S    G  G T+APLFSRIHTSLISIW AISRAQ                  TKNYEI     GV E     + FFHAFPGGLEKA IN
Subjt:  RARPKIQLSIHSWDPGGPGGTTSAPLFSRIHTSLISIWTAISRAQ------------------TKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPIN

Query:  RIFLILPSRKRKEELI
        R FLILPS + + E++
Subjt:  RIFLILPSRKRKEELI

YP_009439912.1 ribosomal protein L33 [Gynostemma caulopterum]

9.9e-15

95.45

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPR
        +ILECTRCVRNGVNKES+GISRYITQKNRHNTPSRLELRKFCPR
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPR

YP_009447471.1 ribosomal protein L33 [Cucurbita maxima]

7.6e-15

97.73

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPR
        +ILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPR
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPR

YP_009447472.1 ribosomal protein S18 [Cucurbita maxima]

3.4e-15

98.08

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Query:  KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTIEL
        KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTI L
Subjt:  KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTIEL

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IFH5 Ribosomal protein S18

1.6e-15

98.08

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Query:  KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTIEL
        KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTI L
Subjt:  KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTIEL

A0A3B6LUA3 Uncharacterized protein ycf68

5.6e-16

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Query:  RARPKIQLSIHSWDPGGPGGTTSAPLFSRIHTSLISIWTAISRAQ------------------TKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPIN
        + R  + L+ +S    G  G T+APLFSRIHTSLISIW AISRAQ                  TKNYEI     GV E     + FFHAFPGGLEKA IN
Subjt:  RARPKIQLSIHSWDPGGPGGTTSAPLFSRIHTSLISIWTAISRAQ------------------TKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPIN

Query:  RIFLILPSRKRKEELI
        R FLILPS + + E++
Subjt:  RIFLILPSRKRKEELI

A0A6N2L1K4 Uncharacterized protein ycf68

3.9e-25

71.59

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Query:  GGPGGTTSAPLFSRIHTSLISIWTAISRAQTKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPINRIFLILPSRKRKEELILECTR
        G  GGTT APLFSRIHTSLIS+WTAISRAQTKNYEIAPFILG        + FFHAFPGGLEKA INRIFL LPSRK + E++    R
Subjt:  GGPGGTTSAPLFSRIHTSLISIWTAISRAQTKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPINRIFLILPSRKRKEELILECTR

A0A6N2MWA8 Uncharacterized protein ycf68

7.6e-21

68.18

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Query:  GGPGGTTSAPLFSRIHTSLISIWTAISRAQTKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPINRIFLILPSRKRKEELILECTR
        G  GGTT APLFSRIHTSLIS+WTAISRAQTKNYEIAPFILG   G      FF    GGLEKA INRIFL LPSRK + E++    R
Subjt:  GGPGGTTSAPLFSRIHTSLISIWTAISRAQTKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPINRIFLILPSRKRKEELILECTR

G7JH54 50S ribosomal protein L33

2.5e-16

40.59

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP---------------------------------------------------------
        +ILEC+ C +  VNKES GISRYITQKNRHNTP+RLELRKFCP                                                         
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP---------------------------------------------------------

Query:  ------------------RKILSRRVNRLTLKQQRLITIAIKQARILSLLPFL--------NNEKQFERR
                           KILSRRVNR TLKQQRLITIAIKQARILSLLPF+        N +K++E++
Subjt:  ------------------RKILSRRVNRLTLKQQRLITIAIKQARILSLLPFL--------NNEKQFERR

SwissProt top hits

e value

%identity

Alignment

A0ZZ56 50S ribosomal protein L33, chloroplastic

5.4e-16

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Query:  SRKRKEELILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP
        S+  +  +ILECT CVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCP
Subjt:  SRKRKEELILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP

A6MM57 50S ribosomal protein L33, chloroplastic

3.2e-16

93.02

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP
        +ILECT CVRNGVNKES+GISRYITQKNRHNTPSRLELRKFCP
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP

B1A956 50S ribosomal protein L33, chloroplastic

3.2e-16

93.02

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP
        +ILECT CVRNGVNKES GISRYITQKNRHNTPSRLELRKFCP
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP

Q2L929 50S ribosomal protein L33, chloroplastic

5.4e-16

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Query:  SRKRKEELILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP
        S+  +  +ILECT CVRNGVNKES GISRYITQKNRHNTPSRLEL+KFCP
Subjt:  SRKRKEELILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP

Q2QD68 50S ribosomal protein L33, chloroplastic

2.9e-17

93.18

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPR
        +ILECTRCVRNGVNK+S+GISRYITQKNRHNTPSRLELRKFCPR
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCPR

Arabidopsis top hits

e value

%identity

Alignment

ATCG00640.1 ribosomal protein L33

2.1e-15

83.72

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Query:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP
        +ILECT CVRN + KE+ GISRYITQKNRHNTPSRLELRKFCP
Subjt:  LILECTRCVRNGVNKESVGISRYITQKNRHNTPSRLELRKFCP

ATCG00650.1 ribosomal protein S18

2.1e-15

84.62

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Query:  KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTIEL
        KILSRRVNR+TLKQQRLITIAIKQARILSLLPFLNN+KQFER  ST  T  L
Subjt:  KILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTIEL

Sequences

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CDS sequence

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ATGTATCGAAGCAAGCCTTCGGTAGTCACAAAAAGTGGGATGCTGTATTTCCAGGATTGGATTTCATATTCGAATGAACCCCGTAATCGTACGAAAGATCTCTCCCTTTC
CAAATCGGACGTGAAAGTTCAAGAAGAGAAGAAAGCCGAAACTCAAGCAAGACAAGATAGGAAGAGTAAGGAAAGACGAAAGAGGAATGAGAGAGACTTTACGGGAGAGG
AAGACGAATCATTTATTAGAGGCGATAACGGAAAGCTAGAACTCTTAGTTCTCGGGCGAAGAGGTTCAAGAGCGAGACCAAAGATCCAACTTTCTATTCACTCGTGGGAT
CCGGGCGGTCCGGGGGGGACCACCTCGGCTCCTCTCTTCTCGAGAATCCATACATCCCTTATCAGTATATGGACAGCTATCTCTCGAGCACAGACCAAGAACTACGAGAT
CGCCCCTTTCATTCTGGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGCTCCAATCAATAGGATTTTCTTAATCC
TCCCTTCCCGAAAGCGAAAGGAAGAACTTATTTTGGAATGTACTCGTTGTGTTCGAAACGGTGTTAATAAGGAATCCGTGGGGATTTCCAGATATATTACTCAAAAGAAT
CGACACAATACGCCTAGTCGATTGGAATTGAGAAAATTCTGTCCCCGAAAAATATTATCTAGACGGGTAAATAGATTGACCTTAAAACAGCAACGCTTAATTACTATTGC
TATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAAGGGCGTCTACCGCTGGAACTATTGAGCTCGGCAAGAAGTACTTGG
TACTACGATCATTGGAGGAACAATACCTAAACCTGAGGATACTCCAGAATCTTTTCAATTGCTCGTTCGAGAATTACGATCTTTGGCTTTGGGGTTAA

mRNA sequence

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Protein sequence

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MYRSKPSVVTKSGMLYFQDWISYSNEPRNRTKDLSLSKSDVKVQEEKKAETQARQDRKSKERRKRNERDFTGEEDESFIRGDNGKLELLVLGRRGSRARPKIQLSIHSWD
PGGPGGTTSAPLFSRIHTSLISIWTAISRAQTKNYEIAPFILGVTEGSYHSSLFFHAFPGGLEKAPINRIFLILPSRKRKEELILECTRCVRNGVNKESVGISRYITQKN
RHNTPSRLELRKFCPRKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERRASTAGTIELGKKYLVLRSLEEQYLNLRILQNLFNCSFENYDLWLWG

CmoCh01G015880 (gene) of Cucurbita moschata (Rifu) v1 genome