CuGenDBv2

Gene ID	CmoCh01G015890
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	DNA-directed RNA polymerase subunit beta
Genome location	Cmo_Chr01:12201210..12204225
RNA-Seq Expression	CmoCh01G015890
Synteny	CmoCh01G015890
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0032549 - ribonucleoside binding (molecular function)
InterPro domains	IPR007120 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain IPR015712 - DNA-directed RNA polymerase, subunit 2 IPR037033 - DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

AHM88854.1 RNA polymerase beta subunit, partial [Lagenaria siceraria]

2.6e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

AHM89856.1 RNA polymerase beta subunit [Lagenaria siceraria]

2.6e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

QJR52948.1 RNA polymerase beta subunit [Herpetospermum pedunculosum]

2.6e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

YP_009752827.1 RNA polymerase subunit beta [Baijiania yunnanensis]

2.6e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

YP_009753166.1 RNA polymerase subunit beta [Trichosanthes truncata]

2.6e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

TrEMBL top hits

e value

%identity

Alignment

A0A1S4ETZ9 DNA-directed RNA polymerase subunit beta

1.2e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

A0A1X9Q1B9 DNA-directed RNA polymerase subunit beta

1.2e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

A0A218KG28 DNA-directed RNA polymerase subunit beta

1.2e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

A0A249RZI0 DNA-directed RNA polymerase subunit beta

1.2e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

A0A6H0ETN6 DNA-directed RNA polymerase subunit beta

1.2e-38

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

SwissProt top hits

e value

%identity

Alignment

Q2MIJ5 DNA-directed RNA polymerase subunit beta

2.2e-40

92.86

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

Q33C46 DNA-directed RNA polymerase subunit beta

2.2e-40

92.86

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

Q3C1G7 DNA-directed RNA polymerase subunit beta

2.2e-40

92.86

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

Q4VZP1 DNA-directed RNA polymerase subunit beta

3.4e-41

95.24

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

Q8S8X9 DNA-directed RNA polymerase subunit beta

2.2e-40

92.86

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGKSRIFDGRTGNPFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

Arabidopsis top hits

e value

%identity

Alignment

ATCG00190.1 RNA polymerase subunit beta

5.9e-41

91.67

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Query:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK
        MNVGQIFECSLGLAGSLLDRHYRI PFDERYEQEASRKLVFSELYEASKQTA+PWVFEPEYPGKSRIFDGRTG+PFEQP  + K
Subjt:  MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSK

ATCG01090.1 NADPH dehydrogenases

8.6e-16

94.74

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Query:  VEYCPTNCLSMTEEYELSTYDRHELNYNQISLGRLPMS
        VEYCPTNCLSMTEEYE STYDRHELNYNQI+LGRLPMS
Subjt:  VEYCPTNCLSMTEEYELSTYDRHELNYNQISLGRLPMS

Sequences

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CDS sequence

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ATGAATGTAGGACAGATATTTGAGTGCTCACTCGGGTTAGCGGGGAGTTTGCTAGATAGACATTATCGAATAGTACCTTTTGATGAGAGATATGAACAAGAGGCTTCTAG
AAAACTAGTCTTTTCTGAATTATATGAAGCCAGTAAGCAAACAGCGAGTCCATGGGTATTTGAACCCGAGTATCCGGGAAAAAGCAGAATATTTGATGGAAGAACGGGAA
ATCCTTTTGAACAACCTACTAGACTTTCGAAGAAGATCAGCCGCGTTGAATATTGTCCAACAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGT
CACGAATTGAATTATAATCAAATTTCTTTGGGTCGTTTACCAATGTCAGACAGAGCTAAGATTCCCCAGCCAAAACACAAGACAGCCGGCTCTAACAATTCCGTCGCCGT
CTACCAAAACAACCGGAAATGTTTCAAAAAAGGTCGGCATACGGCGTACAAAAAGTTCGCGCCCTTCTTTATCTCTAAAAACAGGCTTACCTTGTTCAACCCTAGTGAAA
GAAAGGCTAATGCAGTTCGGTTGAGTCTTTCGTTTACTGGTCAGGGAGAGTCAAGTCATTTCATATGCTTTCCCGAGTTCAAGACTGAGTTAAAGAAAGAAATGGGGTCC
TGGAGAAATCAGGATTAA

mRNA sequence

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Protein sequence

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MNVGQIFECSLGLAGSLLDRHYRIVPFDERYEQEASRKLVFSELYEASKQTASPWVFEPEYPGKSRIFDGRTGNPFEQPTRLSKKISRVEYCPTNCLSMTEEYELSTYDR
HELNYNQISLGRLPMSDRAKIPQPKHKTAGSNNSVAVYQNNRKCFKKGRHTAYKKFAPFFISKNRLTLFNPSERKANAVRLSLSFTGQGESSHFICFPEFKTELKKEMGS
WRNQD

CmoCh01G015890 (gene) of Cucurbita moschata (Rifu) v1 genome