; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G015970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G015970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionreplication protein A 32 kDa subunit A-like
Genome locationCmo_Chr01:12247131..12251004
RNA-Seq ExpressionCmoCh01G015970
SyntenyCmoCh01G015970
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591621.1 Replication protein A 32 kDa subunit A, partial [Cucurbita argyrosperma subsp. sororia]1.6e-9180.97Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQT DSS +K+RETPG+VP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ
        DTKQMDEIQDGMY+RV GHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ  NG  STQFQSSDS VK  +Q+GSSGYQTASS L +EQ
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ

Query:  HTLMSKRTVTNWSLTICSCPPALQKK
        HT+  K+   +  L     P ++ K+
Subjt:  HTLMSKRTVTNWSLTICSCPPALQKK

KAG6608190.1 Cytoplasmic 60S subunit biogenesis factor REI1-like 1, partial [Cucurbita argyrosperma subsp. sororia]1.8e-10390.09Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        +++SSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASH GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQH
        DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQH
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQH

Query:  TLMSKRTVTNWSLTICSCPPAL
        T+  K+      L     P ++
Subjt:  TLMSKRTVTNWSLTICSCPPAL

KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]1.6e-9180.97Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQT DSS +K+RETPG+VP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ
        DTKQMDEIQDGMY+RV GHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ  NG  STQFQSSDS VK  +Q+GSSGYQTASS L +EQ
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ

Query:  HTLMSKRTVTNWSLTICSCPPALQKK
        HT+  K+   +  L     P ++ K+
Subjt:  HTLMSKRTVTNWSLTICSCPPALQKK

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]6.6e-9381.86Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQTNDSS +K+RETPG+VP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ
        DTKQMDEIQDGMY+RV GHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ  NG  STQFQSSDS VK  +Q+GSSGYQTASS L +EQ
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ

Query:  HTLMSKRTVTNWSLTICSCPPALQKK
        HT+  K+   +  L     P ++ K+
Subjt:  HTLMSKRTVTNWSLTICSCPPALQKK

XP_023524340.1 replication protein A 32 kDa subunit A-like [Cucurbita pepo subsp. pepo]5.7e-10590.22Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQH
        DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLS++QH
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQH

Query:  TLMSKRTVTNWSLTICSCPPALQKK
        T+  K+      L     P ++ K+
Subjt:  TLMSKRTVTNWSLTICSCPPALQKK

TrEMBL top hitse value%identityAlignment
A0A1S3CR64 replication protein A 32 kDa subunit A-like1.6e-8978.76Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSS+QFDSGSGFTSSQTNDSS +KSRE+PG+VPVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ
        DTKQM+EIQDGMYVRV GHLK+FQSNKQIFAFSVRPVTNFDEITFHF+ECIHDHLRNSKLQ   GD STQ Q+SDS VK  VQ+GSSGY T SS + +EQ
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ

Query:  HTLMSKRTVTNWSLTICSCPPALQKK
        HT+  K++     L     P ++ K+
Subjt:  HTLMSKRTVTNWSLTICSCPPALQKK

A0A6J1CUB8 replication protein A 32 kDa subunit A2.1e-8978.76Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQ  DS+ +KSRE+PG+VPVTVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF+VDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQH
        DTKQMD+IQDGMY+RV GHLKIFQ N QIFAFSVRPVTN DEITFHFIECIHD+LRNSKLQ NG  STQ QSSDS+V   VQSGSSGYQTASS LS+ QH
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQH

Query:  TLMSKRTVTNWSLTICSCPPALQKKE
        T+  K+   +  L     P ++ K++
Subjt:  TLMSKRTVTNWSLTICSCPPALQKKE

A0A6J1F8S8 replication protein A 32 kDa subunit A-like3.2e-9381.86Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFTSSQTNDSS +K+RETPG+VP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ
        DTKQMDEIQDGMY+RV GHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ  NG  STQFQSSDS VK  +Q+GSSGYQTASS L +EQ
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQ

Query:  HTLMSKRTVTNWSLTICSCPPALQKK
        HT+  K+   +  L     P ++ K+
Subjt:  HTLMSKRTVTNWSLTICSCPPALQKK

A0A6J1IMU1 replication protein A 32 kDa subunit A-like1.5e-9080.26Show/hide
Query:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
        MFSSSQFDSGSGFT SQTNDSS +K+RETPG+VP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF
Subjt:  MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTF

Query:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTAS--SGLSA
        DTKQMDEIQDGMY+RV GHLKIFQSNKQIFAFSVRP+TNFDEITFHFIECIH+HLRNSKLQ  NG  STQFQSSDS VK  +Q+GSSGYQTAS  S L +
Subjt:  DTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP-NGDVSTQFQSSDSSVKPAVQSGSSGYQTAS--SGLSA

Query:  EQHTLMSKRTVTNWSLTICSCPPALQKK
        EQHT+  K+   +  L     P ++ K+
Subjt:  EQHTLMSKRTVTNWSLTICSCPPALQKK

A0A6J1J2M7 replication protein A 32 kDa subunit A-like4.7e-8987.06Show/hide
Query:  SRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQS
        SRETPGVVPVTVKQISE SHSGEEKANFVINGVD TNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDG+YV VIGHLKIFQS
Subjt:  SRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQS

Query:  NKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQHTLMSKRTVTNWSLTICSCPPALQKK
        NKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQP GDVSTQFQSSDSS+KPAVQSGSSGYQTASSGLS+EQHT+  K   TN    +    P+   K
Subjt:  NKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQHTLMSKRTVTNWSLTICSCPPALQKK

Query:  E
        E
Subjt:  E

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C1.3e-2234.95Show/hide
Query:  SGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTK
        S +G  ++     S  +     G VP TV  IS +     +  G     F I+GV+ TNV ++G+V     R+TD+ F +DD TG+I   RW+ D  DT+
Subjt:  SGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTK

Query:  QMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQ
            IQ+G+YV+V  +L  FQ+ KQ  A S+RP+ NF+E+  HFIEC+H HL + + +    +    Q+++ +  P+   G   YQ
Subjt:  QMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQ

Q6H7J5 Replication protein A 32 kDa subunit B3.6e-3338.1Show/hide
Query:  SSSQFDSGSGFTSSQTNDSS---------LSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCK
        ++S    G GF  SQ  +++           KSR    ++P+TVKQI +AS + ++K+NF +NG++++ V +VG++  K +R TD++F +DDGTGR+   
Subjt:  SSSQFDSGSGFTSSQTNDSS---------LSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCK

Query:  RWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLR--NSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTA
        RW ND+ DTK+M +IQ+G YV V G LK FQ  +Q+ A+SVR +TNF+++T HF+ C+H HL     K Q N + +T    + +  + ++    S     
Subjt:  RWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLR--NSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTA

Query:  SSGLSAEQHT
        +S  SA Q+T
Subjt:  SSGLSAEQHT

Q6K9U2 Replication protein A 32 kDa subunit A3.8e-3545.5Show/hide
Query:  MFSSSQFD--SGSGFTSSQ---TNDSSLSKSRETPGVVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGC
        M S SQ D  S S FTSSQ    + ++ SKSR     +P+TVKQISEA  S   GE+ A FV++GV+  NV +VG VS K ERNTD++F +DDGTGR+  
Subjt:  MFSSSQFD--SGSGFTSSQ---TNDSSLSKSRETPGVVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGC

Query:  KRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTAS
         RWVND  D+ +   +Q+GMYV VIG LK  Q  K+  AF++RPVT+++E+T HFI+C+  HL N+K Q      T      SS      +G S   T +
Subjt:  KRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTAS

Query:  SGLSAEQHTLMSKRTVTNWSLT
        S  S     L    +VTN S T
Subjt:  SGLSAEQHTLMSKRTVTNWSLT

Q8LFJ8 Replication protein A 32 kDa subunit B1.9e-3140Show/hide
Query:  FSSSQFDSGSGFTSSQT-----NDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV
        F  +   +G GF  SQ        SS  K+R+   ++P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F+VDDGTG + C RW 
Subjt:  FSSSQFDSGSGFTSSQT-----NDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV

Query:  NDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKP--AVQSGSSGYQTASSG
        +   +T++M+ ++ GMYVR+ GHLKIFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+  G   TQ  ++     P   + + +  YQT  S 
Subjt:  NDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKP--AVQSGSSGYQTASSG

Query:  LSAEQHTLMS---KRTVTNW
            Q        K+TV N+
Subjt:  LSAEQHTLMS---KRTVTNW

Q9ZQ19 Replication protein A 32 kDa subunit A2.2e-4349.5Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----TNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR
        MFSSSQF+     SG GF SSQ      + SS +K+R+  G+VPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----TNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR

Query:  IGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPN--GDVSTQFQSSDSSVKPAVQSGSSG
        I CKRWV++TFD ++M+ ++DG YVR+ GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q    GDV+        SV    Q GS+ 
Subjt:  IGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPN--GDVSTQFQSSDSSVKPAVQSGSSG

Query:  YQ
         Q
Subjt:  YQ

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A21.6e-4449.5Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----TNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR
        MFSSSQF+     SG GF SSQ      + SS +K+R+  G+VPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----TNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR

Query:  IGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPN--GDVSTQFQSSDSSVKPAVQSGSSG
        I CKRWV++TFD ++M+ ++DG YVR+ GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q    GDV+        SV    Q GS+ 
Subjt:  IGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPN--GDVSTQFQSSDSSVKPAVQSGSSG

Query:  YQ
         Q
Subjt:  YQ

AT2G24490.2 replicon protein A21.6e-4449.5Show/hide
Query:  MFSSSQFD-----SGSGFTSSQ-----TNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR
        MFSSSQF+     SG GF SSQ      + SS +K+R+  G+VPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ F +DDGTGR
Subjt:  MFSSSQFD-----SGSGFTSSQ-----TNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFIVDDGTGR

Query:  IGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPN--GDVSTQFQSSDSSVKPAVQSGSSG
        I CKRWV++TFD ++M+ ++DG YVR+ GHLK FQ   Q+  FSVRP+ +F+E+TFH+IECIH + +NS+ Q    GDV+        SV    Q GS+ 
Subjt:  IGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPN--GDVSTQFQSSDSSVKPAVQSGSSG

Query:  YQ
         Q
Subjt:  YQ

AT3G02920.1 Replication protein A, subunit RPA321.4e-3240Show/hide
Query:  FSSSQFDSGSGFTSSQT-----NDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV
        F  +   +G GF  SQ        SS  K+R+   ++P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F+VDDGTG + C RW 
Subjt:  FSSSQFDSGSGFTSSQT-----NDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWV

Query:  NDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKP--AVQSGSSGYQTASSG
        +   +T++M+ ++ GMYVR+ GHLKIFQ  + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+  G   TQ  ++     P   + + +  YQT  S 
Subjt:  NDTFDTKQMDEIQDGMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKP--AVQSGSSGYQTASSG

Query:  LSAEQHTLMS---KRTVTNW
            Q        K+TV N+
Subjt:  LSAEQHTLMS---KRTVTNW

AT3G02920.2 Replication protein A, subunit RPA323.1e-3241.15Show/hide
Query:  KSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQ
        ++R+   ++P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F+VDDGTG + C RW +   +T++M+ ++ GMYVR+ GHLKIFQ
Subjt:  KSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQDGMYVRVIGHLKIFQ

Query:  SNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKP--AVQSGSSGYQTASSGLSAEQHTLMS---KRTVTNW
          + +  FSVRPVT+F+EI  HF EC++ H+ N+KL+  G   TQ  ++     P   + + +  YQT  S     Q        K+TV N+
Subjt:  SNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKP--AVQSGSSGYQTASSGLSAEQHTLMS---KRTVTNW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCGTCTCAGACCAATGACTCCTCTTTGTCGAAGAGTCGAGAAACGCCGGGCGTGGTTCCAGTGACGGT
AAAACAGATAAGTGAAGCCTCCCATTCTGGCGAAGAGAAGGCCAACTTTGTGATCAACGGCGTCGATATTACAAATGTTACAATCGTCGGGAAGGTCTCTGAGAAAGCTG
AAAGGAATACTGACATCACATTCATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACTTTTGACACTAAGCAAATGGATGAAATACAAGAT
GGAATGTATGTACGGGTAATTGGGCATTTGAAAATATTTCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTGTTACAAATTTTGACGAGATTACCTTCCACTT
TATTGAATGCATACATGATCACTTGCGGAATTCCAAGTTACAGCCCAATGGAGATGTATCGACACAGTTCCAATCCTCGGATTCATCTGTGAAGCCTGCAGTGCAGAGTG
GCTCGAGTGGATATCAGACAGCATCTTCAGGACTATCGGCTGAGCAGCACACTTTGATGTCAAAAAGAACTGTGACGAATTGGTCCTTGACTATCTGCAGCTGCCCTCCA
GCGTTGCAAAAGAAAGAGGAATACACAGAGATGAACTGTCCCAACAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTCCAGCAGCCAGTTTGATTCCGGCAGTGGATTTACGTCGTCTCAGACCAATGACTCCTCTTTGTCGAAGAGTCGAGAAACGCCGGGCGTGGTTCCAGTGACGGT
AAAACAGATAAGTGAAGCCTCCCATTCTGGCGAAGAGAAGGCCAACTTTGTGATCAACGGCGTCGATATTACAAATGTTACAATCGTCGGGAAGGTCTCTGAGAAAGCTG
AAAGGAATACTGACATCACATTCATTGTAGATGATGGAACAGGAAGAATTGGCTGCAAAAGATGGGTAAACGATACTTTTGACACTAAGCAAATGGATGAAATACAAGAT
GGAATGTATGTACGGGTAATTGGGCATTTGAAAATATTTCAAAGTAACAAGCAAATATTTGCATTCTCTGTAAGGCCTGTTACAAATTTTGACGAGATTACCTTCCACTT
TATTGAATGCATACATGATCACTTGCGGAATTCCAAGTTACAGCCCAATGGAGATGTATCGACACAGTTCCAATCCTCGGATTCATCTGTGAAGCCTGCAGTGCAGAGTG
GCTCGAGTGGATATCAGACAGCATCTTCAGGACTATCGGCTGAGCAGCACACTTTGATGTCAAAAAGAACTGTGACGAATTGGTCCTTGACTATCTGCAGCTGCCCTCCA
GCGTTGCAAAAGAAAGAGGAATACACAGAGATGAACTGTCCCAACAACTGAAAATTCCTTTGAAGAAAATAGTGGACTCCATAAGGG
Protein sequenceShow/hide protein sequence
MFSSSQFDSGSGFTSSQTNDSSLSKSRETPGVVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFIVDDGTGRIGCKRWVNDTFDTKQMDEIQD
GMYVRVIGHLKIFQSNKQIFAFSVRPVTNFDEITFHFIECIHDHLRNSKLQPNGDVSTQFQSSDSSVKPAVQSGSSGYQTASSGLSAEQHTLMSKRTVTNWSLTICSCPP
ALQKKEEYTEMNCPNN