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CmoCh01G016010 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G016010
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCryptochrome DASH
Genome locationCmo_Chr01:12262234..12263054
RNA-Seq ExpressionCmoCh01G016010
SyntenyCmoCh01G016010
Gene Ontology termsGO:0000719 - photoreactive repair (biological process)
GO:0018298 - protein-chromophore linkage (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0003913 - DNA photolyase activity (molecular function)
GO:0071949 - FAD binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7037552.1 hypothetical protein SDJN02_01180, partial [Cucurbita argyrosperma subsp. argyrosperma]2.4e-40100Show/hide
Query:  MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
Subjt:  MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

XP_022142772.1 cryptochrome DASH, chloroplastic/mitochondrial [Momordica charantia]5.3e-0891.43Show/hide
Query:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV
        GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Subjt:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV

XP_022935872.1 cryptochrome DASH, chloroplastic/mitochondrial isoform X2 [Cucurbita moschata]5.3e-0883.78Show/hide
Query:  MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MR CIRPGFR RLCCRCI LI+D LVLPATSDFL+LE
Subjt:  MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

XP_022941135.1 uncharacterized protein LOC111446523 isoform X1 [Cucurbita moschata]2.3e-35100Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

XP_022941136.1 uncharacterized protein LOC111446523 isoform X2 [Cucurbita moschata]2.3e-35100Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

TrEMBL top hitse value%identityAlignment
A0A6J1CNT8 Cryptochrome DASH2.6e-0891.43Show/hide
Query:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV
        GLESEEMDRIAEQ+FRRYSSPSSSG+KRGKGVA+V
Subjt:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV

A0A6J1F6T7 Cryptochrome DASH2.6e-0883.78Show/hide
Query:  MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MR CIRPGFR RLCCRCI LI+D LVLPATSDFL+LE
Subjt:  MRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

A0A6J1FKA6 uncharacterized protein LOC111446523 isoform X21.1e-35100Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

A0A6J1FSP3 uncharacterized protein LOC111446523 isoform X11.1e-35100Show/hide
Query:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
        MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE
Subjt:  MDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELE

A0A6J1IDX9 cryptochrome DASH, chloroplastic/mitochondrial-like2.2e-0788.57Show/hide
Query:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV
        GLESEEMDRIAEQ+FRRY+SPSSS VKRGKGVA+V
Subjt:  GLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTCTTCGGGTGTTAAAAGAGGAAAAGGAGTCGC
CCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTTGCCGGTGTATTCCGCTGATCCAAGATCTTC
TGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGCAATGA
mRNA sequenceShow/hide mRNA sequence
ACACTCCCTACTTCTTCCTCTCTGAAACCTGCGGTCCAAATTGCCTCAAAATCTGCTCGCCATCAATTTTTCCGACGAATCTCGACCATGAATTCGAGATCGAAGCTAGA
TTCTAGGTCGTCGTCGTCGTCGTCGTCGACATGTCGAGTTCCGGGCTAGAATCGGAGGAGATGGACCGGATTGCGGAACAATTGTTCCGGCGGTATTCGTCTCCTTCGTC
TTCGGGTGTTAAAAGAGGAAAAGGAGTCGCCCTTGTTTGTTCAGAAATGACCTCCGTGTGCTGGACAATGAGGCTCTGTATAAGGCCTGGGTTTCGCCCGAGGCTGTGTT
GCCGGTGTATTCCGCTGATCCAAGATCTTCTGGTTCTACCTGCTACTTCGGATTTCCTAGAACTGGAGCAATGA
Protein sequenceShow/hide protein sequence
MSSSGLESEEMDRIAEQLFRRYSSPSSSGVKRGKGVALVCSEMTSVCWTMRLCIRPGFRPRLCCRCIPLIQDLLVLPATSDFLELEQ