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CmoCh01G016180 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G016180
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCmo_Chr01:12338263..12339340
RNA-Seq ExpressionCmoCh01G016180
SyntenyCmoCh01G016180
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608207.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]2.3e-2796.92Show/hide
Query:  DDSPRSSNLKRLTSLVVLLIRRKELHKEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        +DSPRSSNLKRLTSLVVLLIRRKELHKEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYG LLKG
Subjt:  DDSPRSSNLKRLTSLVVLLIRRKELHKEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

XP_022936928.1 pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Cucurbita moschata]1.6e-1556.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

XP_022936929.1 pentatricopeptide repeat-containing protein At5g10690 isoform X2 [Cucurbita moschata]1.6e-1556.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

XP_023535821.1 pentatricopeptide repeat-containing protein At5g10690 isoform X1 [Cucurbita pepo subsp. pepo]1.6e-1556.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

XP_023535823.1 pentatricopeptide repeat-containing protein At5g10690 isoform X3 [Cucurbita pepo subsp. pepo]1.6e-1556.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

TrEMBL top hitse value%identityAlignment
A0A0A0LHF8 Uncharacterized protein3.7e-1556.32Show/hide
Query:  SPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        SPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG
Subjt:  SPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

A0A6J1F9Q1 pentatricopeptide repeat-containing protein At5g10690 isoform X27.5e-1656.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

A0A6J1FEL4 pentatricopeptide repeat-containing protein At5g10690 isoform X17.5e-1656.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA +   EMSKP+NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

A0A6J1IF33 pentatricopeptide repeat-containing protein At5g10690 isoform X21.7e-1556.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA     EMSKP NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

A0A6J1ILI3 pentatricopeptide repeat-containing protein At5g10690 isoform X11.7e-1556.82Show/hide
Query:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        DSPRS NLKRLTS VV L RRK+LH+                        EAC HCGDIDLA     EMSKP NCG+DNVSYGTLLKG
Subjt:  DSPRSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

SwissProt top hitse value%identityAlignment
Q8VYD6 Pentatricopeptide repeat-containing protein At5g106906.6e-0941.18Show/hide
Query:  RSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        R  NLK LTS +VLL RR++L +                        EAC HCG+IDLA +   EM++P   GVD++SY T+LKG
Subjt:  RSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG

Arabidopsis top hitse value%identityAlignment
AT5G10690.1 pentatricopeptide (PPR) repeat-containing protein / CBS domain-containing protein4.7e-1041.18Show/hide
Query:  RSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG
        R  NLK LTS +VLL RR++L +                        EAC HCG+IDLA +   EM++P   GVD++SY T+LKG
Subjt:  RSSNLKRLTSLVVLLIRRKELHK------------------------EACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCGATGACTCTCCTCGGAGTTCTAATCTCAAGCGGCTGACGTCTCTTGTGGTCCTACTCATTCGCCGGAAGGAGCTCCACAAGGAAGCCTGTGCTCACTGCGGTGA
TATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCGATGACTCTCCTCGGAGTTCTAATCTCAAGCGGCTGACGTCTCTTGTGGTCCTACTCATTCGCCGGAAGGAGCTCCACAAGGAAGCCTGTGCTCACTGCGGTGA
TATTGATTTAGCTCCGAAGAATTCCACTGAAATGTCCAAACCAAATAATTGTGGAGTAGACAATGTCAGTTATGGCACGCTATTGAAGGGCTAGGGAGAAGCTAGAAAAG
TTGACTAAGCATTTTGATTATTTGAATCTGTGGAAGAAGGTACTGCTATTGGAGGTCTAGCACTGTCGGCACCACTTATTATGGTCTTCTAAATGCTTTGACTGAACCAG
G
Protein sequenceShow/hide protein sequence
MADDSPRSSNLKRLTSLVVLLIRRKELHKEACAHCGDIDLAPKNSTEMSKPNNCGVDNVSYGTLLKG