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CmoCh01G016300 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G016300
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionOmega-protein
Genome locationCmo_Chr01:12387800..12389810
RNA-Seq ExpressionCmoCh01G016300
SyntenyCmoCh01G016300
Gene Ontology termsGO:0006265 - DNA topological change (biological process)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003917 - DNA topoisomerase type I activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022144286.1 uncharacterized protein LOC111013976 [Momordica charantia]4.6e-3175.24Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSLFLATTSS+AI+SS+ ST PS  SSR G FMAKLQSRTLQ YTSKCIP L FT  CNYAR  Q  FRK GATFSIKT+RAKAGQY +C GPN 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
         FTLY
Subjt:  VFTLY

XP_022936883.1 uncharacterized protein LOC111443338 isoform X3 [Cucurbita moschata]2.1e-2867.62Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSLF+ATTSS+AI+SSVFST PS S SRL   +AKLQSRT Q  TSKCIP L F+  CNYA+C Q VFRK   TF++KT+RAKAGQ  TC GP+ 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
        VFTL+
Subjt:  VFTLY

XP_023536595.1 uncharacterized protein LOC111797719 [Cucurbita pepo subsp. pepo]1.6e-2867.62Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSLF+ATTSS+AI+SSVFST PS S SRL   ++KLQSRTLQ  TSKCIP L F+  CNYA+C Q VFRK   TF++KT+RAKAGQ  TC GP+ 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
        VFTL+
Subjt:  VFTLY

XP_038897953.1 DNA topoisomerase 1 isoform X1 [Benincasa hispida]1.1e-2971.43Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSL LAT+SS+AI+SSVFST PS SSSRL  FMAKLQS T+Q YTSKCIP L F+  CNYARC Q VFRK   TF+IKT+RA AGQY T   PN 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
        VFTLY
Subjt:  VFTLY

XP_038897954.1 DNA topoisomerase 1 isoform X2 [Benincasa hispida]1.1e-2971.43Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSL LAT+SS+AI+SSVFST PS SSSRL  FMAKLQS T+Q YTSKCIP L F+  CNYARC Q VFRK   TF+IKT+RA AGQY T   PN 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
        VFTLY
Subjt:  VFTLY

TrEMBL top hitse value%identityAlignment
A0A5A7T7A4 DNA topoisomerase8.1e-2666.98Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSV-SSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPN
        M QLQRSL LA++SS+AI+SSVFSTA S  SSSRL  F  KLQ  TLQ YTSKCIP L F  AC+ ARC Q +FRK G TF++KT+RAKAGQY  C GP+
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSV-SSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPN

Query:  YVFTLY
         VFTLY
Subjt:  YVFTLY

A0A6J1CSY4 Omega-protein2.2e-3175.24Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSLFLATTSS+AI+SS+ ST PS  SSR G FMAKLQSRTLQ YTSKCIP L FT  CNYAR  Q  FRK GATFSIKT+RAKAGQY +C GPN 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
         FTLY
Subjt:  VFTLY

A0A6J1F8P8 Omega-protein1.0e-2867.62Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSLF+ATTSS+AI+SSVFST PS S SRL   +AKLQSRT Q  TSKCIP L F+  CNYA+C Q VFRK   TF++KT+RAKAGQ  TC GP+ 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
        VFTL+
Subjt:  VFTLY

A0A6J1FEH1 DNA topoisomerase1.0e-2867.62Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSLF+ATTSS+AI+SSVFST PS S SRL   +AKLQSRT Q  TSKCIP L F+  CNYA+C Q VFRK   TF++KT+RAKAGQ  TC GP+ 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
        VFTL+
Subjt:  VFTLY

A0A6J1IF86 Omega-protein1.0e-2867.62Show/hide
Query:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY
        M QLQRSLF+ATTSS+A++SSVFST PS S SRL   MAKLQSRT Q  TSKCIP L F+  CNYA+C Q VFRK   TF++KT+RAKAGQ  TC GP+ 
Subjt:  MGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYARCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNY

Query:  VFTLY
        VFTL+
Subjt:  VFTLY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTCCGGCGAGGTCAATCGTCGGTCGCCGCTGTAATCTCCGGTCTACTAAACGGATCCTTAGGGCTACAAGCGAACCTGCAATAAACGCATTCGTCCGAACATGCCC
GCCAATTGATACTGTTGAGGCAATGGGCCAGCTTCAGAGGAGCTTGTTCTTGGCCACTACGTCCAGTGATGCCATTACTTCCTCTGTATTTTCAACTGCTCCGTCTGTGT
CATCCTCACGACTCGGTTCTTTCATGGCCAAGTTGCAGAGCAGGACGCTTCAAATTTATACTAGCAAATGCATACCTGCTTTATCTTTTACCCCTGCTTGTAATTACGCC
AGATGTTATCAGTTTGTTTTTAGAAAAGATGGAGCAACATTTTCTATCAAGACTAAACGTGCAAAGGCTGGGCAGTATCATACATGTGCTGGGCCAAATTATGTTTTCAC
TCTATATCCCGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTCCGGCGAGGTCAATCGTCGGTCGCCGCTGTAATCTCCGGTCTACTAAACGGATCCTTAGGGCTACAAGCGAACCTGCAATAAACGCATTCGTCCGAACATGCCC
GCCAATTGATACTGTTGAGGCAATGGGCCAGCTTCAGAGGAGCTTGTTCTTGGCCACTACGTCCAGTGATGCCATTACTTCCTCTGTATTTTCAACTGCTCCGTCTGTGT
CATCCTCACGACTCGGTTCTTTCATGGCCAAGTTGCAGAGCAGGACGCTTCAAATTTATACTAGCAAATGCATACCTGCTTTATCTTTTACCCCTGCTTGTAATTACGCC
AGATGTTATCAGTTTGTTTTTAGAAAAGATGGAGCAACATTTTCTATCAAGACTAAACGTGCAAAGGCTGGGCAGTATCATACATGTGCTGGGCCAAATTATGTTTTCAC
TCTATATCCCGCTTGACAGTGGGATTTCCTCATTCTGTTGCATTATCAAATGCTTCCAACAGACCGTTTTTAAATGGCAGTTTTATTGAGGATTGAGGATTGAGGATTAT
TGGGAGTGAGTCCCACATTGGTTAATTTAGTGGAAGATCATGGG
Protein sequenceShow/hide protein sequence
MAPARSIVGRRCNLRSTKRILRATSEPAINAFVRTCPPIDTVEAMGQLQRSLFLATTSSDAITSSVFSTAPSVSSSRLGSFMAKLQSRTLQIYTSKCIPALSFTPACNYA
RCYQFVFRKDGATFSIKTKRAKAGQYHTCAGPNYVFTLYPA