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CmoCh01G016310 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G016310
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA topoisomerase
Genome locationCmo_Chr01:12389885..12391638
RNA-Seq ExpressionCmoCh01G016310
SyntenyCmoCh01G016310
Gene Ontology termsGO:0006265 - DNA topological change (biological process)
GO:0005694 - chromosome (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003917 - DNA topoisomerase type I activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000380 - DNA topoisomerase, type IA
IPR006171 - TOPRIM domain
IPR023405 - DNA topoisomerase, type IA, core domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591639.1 hypothetical protein SDJN03_13985, partial [Cucurbita argyrosperma subsp. sororia]9.5e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPR IDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

XP_022936883.1 uncharacterized protein LOC111443338 isoform X3 [Cucurbita moschata]9.5e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPR IDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

XP_022976242.1 uncharacterized protein LOC111476696 isoform X1 [Cucurbita maxima]2.5e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKS+KVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPRGIDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

XP_022976244.1 uncharacterized protein LOC111476696 isoform X2 [Cucurbita maxima]2.5e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKS+KVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPRGIDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

XP_023536595.1 uncharacterized protein LOC111797719 [Cucurbita pepo subsp. pepo]9.5e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPR IDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

TrEMBL top hitse value%identityAlignment
A0A6J1F8P8 Omega-protein4.6e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPR IDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

A0A6J1F9K7 Omega-protein4.6e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPR IDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

A0A6J1FEH1 DNA topoisomerase4.6e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPR IDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

A0A6J1IF86 Omega-protein1.2e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKS+KVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPRGIDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

A0A6J1IMZ7 Omega-protein1.2e-3696.47Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTHLKS+KVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHE ISIARVVFHEITEASIKSALQSPRGIDANLVQA
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

SwissProt top hitse value%identityAlignment
P34185 DNA topoisomerase 11.2e-1243.53Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VP      +K++K +L  A+ LILA+D DREGE+I+WH++++LQ       R+   R+VFHEIT+ +I++AL++ R +D  LV A
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

P47368 DNA topoisomerase 16.2e-1446.75Show/hide
Query:  LKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        +KSIK   + A+N+ LASDPDREGEAI+WH+ ++L Q+D    +    R+ F+EIT+ ++  AL+ PR ID N V++
Subjt:  LKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

P73810 DNA topoisomerase 11.1e-1343.53Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        +P      +K ++ +L  A+ +ILA+D DREGE+I+WH++++LQ       ++ I R+VFHEIT+ +I+SAL++ R ID NLV A
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

Q2FHI8 DNA topoisomerase 12.0e-1246.75Show/hide
Query:  LKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        +K +K     A+N+ LASDPDREGEAIAWH+ ++L+ +D+        RVVF+EIT+ ++K + ++PR I+ NLV A
Subjt:  LKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

Q2FZ32 DNA topoisomerase 12.0e-1246.75Show/hide
Query:  LKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        +K +K     A+N+ LASDPDREGEAIAWH+ ++L+ +D+        RVVF+EIT+ ++K + ++PR I+ NLV A
Subjt:  LKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA

Arabidopsis top hitse value%identityAlignment
AT4G31210.1 DNA topoisomerase, type IA, core2.2e-3583.53Show/hide
Query:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA
        VPS AWTH+KSIKV+LNGAENLILASDPDREGEAIAWHIIEMLQQQ ALHE +++ARVVFHEITE++IKSALQSPR ID +LV A
Subjt:  VPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSALQSPRGIDANLVQA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTCAAAGTGGACAATATCATACCATTGTGGGGATCCGTGATTCCTAACATAGTATCCGAGCATGTTCAGTTCTCCAGAAAGGAGTCGAGCCTCGAAGTATGGTGTGG
GTGGGTTCCATCTCCTGCCTGGACTCATCTCAAGAGCATAAAAGTTTCCTTAAATGGAGCAGAGAACCTTATTCTTGCATCTGATCCGGATCGTGAAGGTGAGGCTATTG
CTTGGCATATAATCGAGATGTTACAGCAGCAGGATGCCCTACACGAACGTATTAGCATTGCAAGGGTTGTTTTCCATGAAATAACTGAGGCTTCGATCAAGAGTGCCCTG
CAATCTCCTAGAGGAATTGATGCAAACTTGGTTCAAGCTTTACCTTGCACGACGTGCTTTAGATTATTTGATTGGCTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTCAAAGTGGACAATATCATACCATTGTGGGGATCCGTGATTCCTAACATAGTATCCGAGCATGTTCAGTTCTCCAGAAAGGAGTCGAGCCTCGAAGTATGGTGTGG
GTGGGTTCCATCTCCTGCCTGGACTCATCTCAAGAGCATAAAAGTTTCCTTAAATGGAGCAGAGAACCTTATTCTTGCATCTGATCCGGATCGTGAAGGTGAGGCTATTG
CTTGGCATATAATCGAGATGTTACAGCAGCAGGATGCCCTACACGAACGTATTAGCATTGCAAGGGTTGTTTTCCATGAAATAACTGAGGCTTCGATCAAGAGTGCCCTG
CAATCTCCTAGAGGAATTGATGCAAACTTGGTTCAAGCTTTACCTTGCACGACGTGCTTTAGATTATTTGATTGGCTTTAA
Protein sequenceShow/hide protein sequence
MLKVDNIIPLWGSVIPNIVSEHVQFSRKESSLEVWCGWVPSPAWTHLKSIKVSLNGAENLILASDPDREGEAIAWHIIEMLQQQDALHERISIARVVFHEITEASIKSAL
QSPRGIDANLVQALPCTTCFRLFDWL