; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G017090 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G017090
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription initiation factor TFIID subunit 5
Genome locationCmo_Chr01:12828508..12831035
RNA-Seq ExpressionCmoCh01G017090
SyntenyCmoCh01G017090
Gene Ontology termsGO:0006367 - transcription initiation from RNA polymerase II promoter (biological process)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0016020 - membrane (cellular component)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
InterPro domainsIPR037264 - TFIID subunit TAF5, NTD2 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608296.1 Transcription initiation factor TFIID subunit 5, partial [Cucurbita argyrosperma subsp. sororia]3.7e-2892.75Show/hide
Query:  QNGRRTDSGFFQEFRQNKTNSSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYKILWL
        +NGRRTDSG FQEFRQNKTNSSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK  +L
Subjt:  QNGRRTDSGFFQEFRQNKTNSSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYKILWL
KAG7037645.1 Transcription initiation factor TFIID subunit 5 [Cucurbita argyrosperma subsp. argyrosperma]8.9e-3094.37Show/hide
Query:  MLQNGRRTDSGFFQEFRQNKTNSSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYKILWL
        MLQNGRRTDSG FQEFRQNKTNSSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK  +L
Subjt:  MLQNGRRTDSGFFQEFRQNKTNSSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYKILWL
XP_004145505.1 transcription initiation factor TFIID subunit 5 isoform X1 [Cucumis sativus]1.2e-1369.23Show/hide
Query:  RRTDSGFFQEFRQNKTNSSCS---IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F +E RQNKTNSS     ID+D AKHL S SEAENIPA+YLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTNSSCS---IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
XP_022133497.1 transcription initiation factor TFIID subunit 5 [Momordica charantia]3.1e-1469.23Show/hide
Query:  RRTDSGFFQEFRQNKTN---SSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F +E R NKTN   SS SIDLDFA HL S +EAENIPA+YLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTN---SSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
XP_038897348.1 transcription initiation factor TFIID subunit 5 [Benincasa hispida]1.1e-1470.77Show/hide
Query:  RRTDSGFFQEFRQNKTN---SSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F +E RQNKTN   SS SID+DFAKHL + SE ENIPARYLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTN---SSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
TrEMBL top hitse value%identityAlignment
A0A0A0L139 Uncharacterized protein5.6e-1469.23Show/hide
Query:  RRTDSGFFQEFRQNKTNSSCS---IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F +E RQNKTNSS     ID+D AKHL S SEAENIPA+YLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTNSSCS---IDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
A0A6J1BWV4 transcription initiation factor TFIID subunit 51.5e-1469.23Show/hide
Query:  RRTDSGFFQEFRQNKTN---SSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F +E R NKTN   SS SIDLDFA HL S +EAENIPA+YLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTN---SSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
A0A6J1IFS3 transcription initiation factor TFIID subunit 5 isoform X37.3e-1470.77Show/hide
Query:  RRTDSGFFQEFRQNKTNSS---CSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F  E R NKTNSS    SIDLDFAK L S SE ENIPARYLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTNSS---CSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
A0A6J1IID2 transcription initiation factor TFIID subunit 5 isoform X27.3e-1470.77Show/hide
Query:  RRTDSGFFQEFRQNKTNSS---CSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F  E R NKTNSS    SIDLDFAK L S SE ENIPARYLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTNSS---CSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
A0A6J1IMC3 transcription initiation factor TFIID subunit 5 isoform X17.3e-1470.77Show/hide
Query:  RRTDSGFFQEFRQNKTNSS---CSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + T+  F  E R NKTNSS    SIDLDFAK L S SE ENIPARYLEGY KLRSWA NSLDLYK
Subjt:  RRTDSGFFQEFRQNKTNSS---CSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
SwissProt top hitse value%identityAlignment
Q6S7B0 Transcription initiation factor TFIID subunit 57.1e-0649.09Show/hide
Query:  RQNKTNSSCSIDL----DFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + N  +S  S+D     +  K + S S+ E+ P RY EGY KLRSWA NSLDLYK
Subjt:  RQNKTNSSCSIDL----DFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
Arabidopsis top hitse value%identityAlignment
AT5G25150.1 TBP-associated factor 55.0e-0749.09Show/hide
Query:  RQNKTNSSCSIDL----DFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK
        + N  +S  S+D     +  K + S S+ E+ P RY EGY KLRSWA NSLDLYK
Subjt:  RQNKTNSSCSIDL----DFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGAATGGACGAAGAACAGATAGCGGATTTTTTCAGGAGTTTCGTCAGAACAAGACTAATTCTTCGTGTTCCATTGATCTCGACTTCGCCAAGCACTTGCATTC
TTGCTCCGAAGCAGAGAATATTCCAGCCAGATACCTTGAAGGATATAAAAAGCTTAGGTCCTGGGCTTGCAACTCACTAGATTTGTACAAGATCTTGTGGCTAAAGGACA
TGCCCAAGAAGGTCTGCAAACTAATATCTTTCTTGACAGTCTCATGTAATGGAGGAAAATATGATCAAATTTTTTGTATTTTGCTTGATATCTGCCAGCTTGAACCTTTT
TCAATAGGTTCCGTGAAGACCATGAAATGA
mRNA sequenceShow/hide mRNA sequence
TTCACCTTCCGGTTTCTTTGAGCGAGAAGGAGAAGAAAGCAAGTTCGAGCGGTAGAAAAGTGCGGGAAGGGGAAGGGAGAGCGCGCAATTTGTGGAGGAAGGAAGTGAAA
TACTGAATGTTGCAGAATGGACGAAGAACAGATAGCGGATTTTTTCAGGAGTTTCGTCAGAACAAGACTAATTCTTCGTGTTCCATTGATCTCGACTTCGCCAAGCACTT
GCATTCTTGCTCCGAAGCAGAGAATATTCCAGCCAGATACCTTGAAGGATATAAAAAGCTTAGGTCCTGGGCTTGCAACTCACTAGATTTGTACAAGATCTTGTGGCTAA
AGGACATGCCCAAGAAGGTCTGCAAACTAATATCTTTCTTGACAGTCTCATGTAATGGAGGAAAATATGATCAAATTTTTTGTATTTTGCTTGATATCTGCCAGCTTGAA
CCTTTTTCAATAGGTTCCGTGAAGACCATGAAATGA
Protein sequenceShow/hide protein sequence
MLQNGRRTDSGFFQEFRQNKTNSSCSIDLDFAKHLHSCSEAENIPARYLEGYKKLRSWACNSLDLYKILWLKDMPKKVCKLISFLTVSCNGGKYDQIFCILLDICQLEPF
SIGSVKTMK