CuGenDBv2

Gene ID	CmoCh01G017460
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	polyadenylate-binding protein-interacting protein 7
Genome location	Cmo_Chr01:13018218..13018661
RNA-Seq Expression	CmoCh01G017460
Synteny	CmoCh01G017460
Gene Ontology terms	GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR002625 - Smr domain IPR036063 - Smr domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608329.1 Polyadenylate-binding protein-interacting protein 7, partial [Cucurbita argyrosperma subsp. sororia]

1.5e-50

98.08

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

KAG7037678.1 Polyadenylate-binding protein-interacting protein 7 [Cucurbita argyrosperma subsp. argyrosperma]

2.0e-60

92.37

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Query:  QEFSELLDNSL--TVHSVLLFIDVYVRYFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPA
        Q F   LD++    VHSVLLFIDVYVRYFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPA
Subjt:  QEFSELLDNSL--TVHSVLLFIDVYVRYFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPA

Query:  RLPVAVQRYLIEEEGLDFSEPQPGLLRVVIY
        RLPVAVQRYLIEEEGLDFSEPQPGLLRVVIY
Subjt:  RLPVAVQRYLIEEEGLDFSEPQPGLLRVVIY

XP_022939991.1 polyadenylate-binding protein-interacting protein 7 isoform X1 [Cucurbita moschata]

1.5e-50

98.08

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

XP_022981256.1 polyadenylate-binding protein-interacting protein 7 isoform X1 [Cucurbita maxima]

4.3e-50

97.12

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFS+PQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

XP_023524131.1 polyadenylate-binding protein-interacting protein 7 isoform X1 [Cucurbita pepo subsp. pepo]

1.5e-50

98.08

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CM79 LOW QUALITY PROTEIN: polyadenylate-binding protein-interacting protein 7

2.5e-48

94.23

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGAD+ GNGRG ERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRG+RTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

A0A6J1F7X2 pentatricopeptide repeat-containing protein At4g33170

3.0e-49

95.19

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGAD+ GNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARA+GQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

A0A6J1FHA7 polyadenylate-binding protein-interacting protein 7 isoform X1

7.1e-51

98.08

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

A0A6J1IHN2 pentatricopeptide repeat-containing protein At4g33170

6.7e-49

94.23

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGAD+ GNGRGHERMIDLHGLHV+EAIHVLKHELSVLRGTARA+GQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

A0A6J1IW17 polyadenylate-binding protein-interacting protein 7 isoform X1

2.1e-50

97.12

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFS+PQPGLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        VVIY
Subjt:  VVIY

SwissProt top hits

e value

%identity

Alignment

O64843 Polyadenylate-binding protein-interacting protein 7

1.3e-41

79.81

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RN +G    GN RG+ERMIDLHGLHVSEA+ VLKHELSVLR TARA+ +RLQ+YICVGTGHHTRGSRTPARLPVAVQRYL+EEEGLD+SEPQ GLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        V+IY
Subjt:  VVIY

Q86UW6 NEDD4-binding protein 2

5.1e-06

35.29

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Query:  ERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLRVVI
        + ++DLHGLHV EA+  L   L       + +G +  + +  G G+H++G    AR+  AV +YLI      FSE +PG L+V++
Subjt:  ERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLRVVI

Arabidopsis top hits

e value

%identity

Alignment

AT2G26280.1 CTC-interacting domain 7

9.2e-43

79.81

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Query:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR
        Y  RN +G    GN RG+ERMIDLHGLHVSEA+ VLKHELSVLR TARA+ +RLQ+YICVGTGHHTRGSRTPARLPVAVQRYL+EEEGLD+SEPQ GLLR
Subjt:  YFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTRGSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLR

Query:  VVIY
        V+IY
Subjt:  VVIY

Sequences

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CDS sequence

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ATGAACGGTTCAAAGAGTGATGGCACGCTTTTCTTAAGACTTGCACAACGACTACAGGAATTTTCTGAATTGCTTGATAACTCGCTTACAGTTCATTCTGTTCTGCTGTT
TATTGATGTGTATGTACGGTATTTCTTCAGGAATCAAATAGGTGCAGACAGTCCAGGAAATGGAAGAGGACACGAACGCATGATCGACTTGCACGGATTGCACGTTAGCG
AAGCGATTCATGTCTTGAAGCACGAGCTGAGCGTGCTGAGGGGTACTGCCAGGGCCTCCGGACAACGTCTGCAGGTTTATATTTGTGTTGGAACAGGACACCACACCCGG
GGCTCCCGCACTCCTGCTAGACTTCCGGTAGCTGTACAGAGATATTTGATCGAAGAGGAAGGCCTCGACTTCAGCGAGCCTCAACCAGGGCTGCTCAGAGTTGTGATTTA
TTAA

mRNA sequence

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Protein sequence

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MNGSKSDGTLFLRLAQRLQEFSELLDNSLTVHSVLLFIDVYVRYFFRNQIGADSPGNGRGHERMIDLHGLHVSEAIHVLKHELSVLRGTARASGQRLQVYICVGTGHHTR
GSRTPARLPVAVQRYLIEEEGLDFSEPQPGLLRVVIY

CmoCh01G017460 (gene) of Cucurbita moschata (Rifu) v1 genome