; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G017920 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G017920
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionRNA-binding protein 2-like
Genome locationCmo_Chr01:13208682..13211220
RNA-Seq ExpressionCmoCh01G017920
SyntenyCmoCh01G017920
Gene Ontology termsGO:0003729 - mRNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608363.1 RNA-binding protein 2, partial [Cucurbita argyrosperma subsp. sororia]1.2e-8695.88Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
        MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKE  TDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD

Query:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVG +  P+
Subjt:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
KAG7037705.1 RNA-binding protein 2 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-8997.06Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
        MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD

Query:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVG +  P+
Subjt:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
XP_022939988.1 RNA-binding protein 2-like [Cucurbita moschata]1.2e-8695.88Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
        MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKE  TDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD

Query:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVG +  P+
Subjt:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
XP_022982403.1 RNA-binding protein 2-like [Cucurbita maxima]6.4e-8594.12Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
        MGDDAYTRYAAS DRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYL KE  TDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD

Query:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISA ESNILFVDGLPTDCTRREVG +  P+
Subjt:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
XP_023522732.1 uncharacterized protein LOC111786735, partial [Cucurbita pepo subsp. pepo]8.7e-9097.13Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
        MGDDAYTRYAAS DRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYL KE  TDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD

Query:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPYALIF
        AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPYAL+F
Subjt:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPYALIF
TrEMBL top hitse value%identityAlignment
A0A1S3BU06 RNA-binding protein 2-like isoform X19.1e-6173.26Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI-PPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFH
        MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W   PPDY+ ++  T+S GPG YGYTD+GG   YPEPVIGGVTSGVSATG  SPF 
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI-PPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFH

Query:  DAQARQRHDIAVGSSPGLMAMADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        D+ A QR DIAVGSSPG+M  AD GHE+ANSL  +R  E  P S +ESNILFVDGLPTDCTRREVG +  P+
Subjt:  DAQARQRHDIAVGSSPGLMAMADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
A0A5D3D938 RNA-binding protein 2-like isoform X19.1e-6173.26Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI-PPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFH
        MGDDAYTRYAASADRAGSVARSGLS YSEAPPL SYPNSTSID W   PPDY+ ++  T+S GPG YGYTD+GG   YPEPVIGGVTSGVSATG  SPF 
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRI-PPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFH

Query:  DAQARQRHDIAVGSSPGLMAMADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        D+ A QR DIAVGSSPG+M  AD GHE+ANSL  +R  E  P S +ESNILFVDGLPTDCTRREVG +  P+
Subjt:  DAQARQRHDIAVGSSPGLMAMADTGHEKANSLG-LRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
A0A6J1CBB3 uncharacterized protein LOC1110099334.8e-6274.27Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPL-TSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFH
        MGDDAY+RYAASADR GSVARS  S YSEAPPL TSYPN+ SID W  PPDYL K+  T+SSG G YGY D+G IRNYPEPVIGGVTSGV+A G TSPF 
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPL-TSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFH

Query:  DAQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        D+ A QR +IAVGSSPGL+ MAD GHE+A+SLGLRN E VPIS +ESNILFVDGLPTDCTRREVG +  P+
Subjt:  DAQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
A0A6J1FN25 RNA-binding protein 2-like5.7e-8795.88Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
        MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKE  TDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD

Query:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVG +  P+
Subjt:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
A0A6J1J4R2 RNA-binding protein 2-like3.1e-8594.12Show/hide
Query:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
        MGDDAYTRYAAS DRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYL KE  TDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD
Subjt:  MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHD

Query:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISA ESNILFVDGLPTDCTRREVG +  P+
Subjt:  AQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
SwissProt top hitse value%identityAlignment
F4HWF9 Nuclear speckle RNA-binding protein B9.9e-0440.82Show/hide
Query:  DTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        D G  + +S+G    E  P+    SN L+V+GLP++C+RREV  I  P+
Subjt:  DTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
Arabidopsis top hitse value%identityAlignment
AT1G21320.1 nucleotide binding;nucleic acid binding7.0e-0540.82Show/hide
Query:  DTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        D G  + +S+G    E  P+    SN L+V+GLP++C+RREV  I  P+
Subjt:  DTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
AT1G21320.2 nucleotide binding;nucleic acid binding7.0e-0540.82Show/hide
Query:  DTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        D G  + +S+G    E  P+    SN L+V+GLP++C+RREV  I  P+
Subjt:  DTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
AT1G76940.2 RNA-binding (RRM/RBD/RNP motifs) family protein7.8e-0429.29Show/hide
Query:  GGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY
        GG    P    GG   G    GN     D   R+   + +   P    +   G +    +G RN     + +  SN L+V+GLP++C+RREV  I  P+
Subjt:  GGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATGATGCTTATACCAGATACGCCGCCTCCGCCGATAGAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCC
CAATTCGACCTCCATTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAACTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCA
TTAGAAATTATCCAGAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCA
GTGGGCAGTAGTCCAGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAA
CATTCTTTTCGTTGATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTATCTTTTCCGCCCCTTCATCGGCTATAAAGATAT
CAGAGTTGTTCACAAGGAGCCCAGACGAAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAG
ATATCTTTTGCTTTGGATCATGAAAATGACATATAG
mRNA sequenceShow/hide mRNA sequence
CGTGTGGCTCGGTGTAAGGTAGGCGGGGGAGAGCTGGAGAGAAGGACGAGGCCGCGGGAGGGTTGCAGCAGCGGGAGCAGAACAGGCGATCAAGCCATGGGAGATGATGC
TTATACCAGATACGCCGCCTCCGCCGATAGAGCTGGAAGTGTAGCGAGGTCTGGCCTTTCAAATTACTCTGAAGCACCTCCTTTAACATCTTACCCCAATTCGACCTCCA
TTGATCCATGGCGCATCCCTCCTGATTATTTGCTGAAAGAACTACAGACAGATTCATCAGGACCTGGTACTTATGGATATACTGACGTAGGAGGCATTAGAAATTATCCA
GAACCAGTTATTGGCGGTGTGACATCTGGAGTGAGTGCAACAGGCAACACATCTCCTTTTCATGATGCACAAGCAAGGCAAAGACATGATATTGCAGTGGGCAGTAGTCC
AGGGTTGATGGCTATGGCTGACACAGGTCACGAAAAAGCCAATTCTCTTGGTCTCAGAAATCCCGAACGTGTTCCAATTTCAGCTCAGGAATCAAACATTCTTTTCGTTG
ATGGACTTCCTACAGATTGTACTAGAAGGGAAGTTGGTCGTATCCTTGCACCTTATGCACTTATCTTTTCCGCCCCTTCATCGGCTATAAAGATATCAGAGTTGTTCACA
AGGAGCCCAGACGAAGGGGAGATAAAGCTACGGTATTATGCTTTGTCGAGTTCATTGAAGCAAGATATTCCCGTGCTGCAATGGAAGCTCTTCAAGATATCTTTTGCTTT
GGATCATGAAAATGACATATAG
Protein sequenceShow/hide protein sequence
MGDDAYTRYAASADRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLLKELQTDSSGPGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIA
VGSSPGLMAMADTGHEKANSLGLRNPERVPISAQESNILFVDGLPTDCTRREVGRILAPYALIFSAPSSAIKISELFTRSPDEGEIKLRYYALSSSLKQDIPVLQWKLFK
ISFALDHENDI