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CmoCh01G017960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G017960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionSAM_MT_RSMB_NOP domain-containing protein
Genome locationCmo_Chr01:13236860..13240562
RNA-Seq ExpressionCmoCh01G017960
SyntenyCmoCh01G017960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012443088.1 PREDICTED: probable 28S rRNA (cytosine-C(5))-methyltransferase isoform X2 [Gossypium raimondii]3.6e-1151.06Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
        MSNAERSAYF+RREAAK+LR VL+G         +  L          + FAL    L  LP+IKDVLE A++L+++WK+I   GEAE FLLQR
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
XP_022135170.1 probable 28S rRNA (cytosine-C(5))-methyltransferase [Momordica charantia]1.4e-1048.25Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS
        +SNA RSAYFARREAAKILRRVLEG         +  L            FAL    L  LPVIKDVLEAADLLSNKWK                 K P 
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS

Query:  FGEAEVFLLQRDKV
         G+AE FL+++  V
Subjt:  FGEAEVFLLQRDKV
XP_038898178.1 28S rRNA (cytosine-C(5))-methyltransferase-like isoform X2 [Benincasa hispida]6.6e-1357.45Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
        MSNA+RSAYFARREAAKILRRVLEG         +  L            FAL    L  LPVIKDVLEAADLLSNKWKK    G+AE FL+++
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
XP_040949081.1 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 isoform X2 [Gossypium hirsutum]3.6e-1151.06Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
        MSNAERSAYF+RREAAK+LR VL+G         +  L          + FAL    L  LP+IKDVLE A++L+++WK+I   GEAE FLLQR
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
XP_040968828.1 25S rRNA (cytosine-C(5))-methyltransferase NSUN5-like isoform X2 [Gossypium hirsutum]8.0e-1150Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
        MSNAERSAYF+RREAAK+LR VL+G         +  L          + FAL    L  LP+IKDVLE A++L+++WK+I   G+AE FLLQR
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQR
TrEMBL top hitse value%identityAlignment
A0A1S3BVF0 probable 28S rRNA (Cytosine-C(5))-methyltransferase isoform X23.3e-1060Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK
        MSNA+RSAYFARREAAKILRRVLEG         +  L            FAL    L  LPVIKDVLEAADLLSNKWK+
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK
A0A5D3D9A2 Putative 28S rRNA (Cytosine-C(5))-methyltransferase isoform X13.3e-1060Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK
        MSNA+RSAYFARREAAKILRRVLEG         +  L            FAL    L  LPVIKDVLEAADLLSNKWK+
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK
A0A6J1C0F2 probable 28S rRNA (Cytosine-C(5))-methyltransferase6.6e-1148.25Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS
        +SNA RSAYFARREAAKILRRVLEG         +  L            FAL    L  LPVIKDVLEAADLLSNKWK                 K P 
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS

Query:  FGEAEVFLLQRDKV
         G+AE FL+++  V
Subjt:  FGEAEVFLLQRDKV
A0A6J1F919 probable 28S rRNA (Cytosine-C(5))-methyltransferase1.9e-1047.75Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS
        MSNA+RSAYFARREAAKILRRVLEG         +  L            FAL    L  LP+IK+VLEAADLLSNKWK                 K P 
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS

Query:  FGEAEVFLLQR
         G+AE FL+++
Subjt:  FGEAEVFLLQR
A0A6J1IIH7 probable 28S rRNA (Cytosine-C(5))-methyltransferase2.5e-1047.75Show/hide
Query:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS
        MSNA+RSAYFARREAAKILRRVLEG         +  L            FAL    L  LP+IK+VLEAADLLSNKWK                 K P 
Subjt:  MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWK-----------------KIPS

Query:  FGEAEVFLLQR
         G+AE FL+++
Subjt:  FGEAEVFLLQR
SwissProt top hitse value%identityAlignment
Q8GYE8 25S rRNA (cytosine-C(5))-methyltransferase NSUN52.8e-0636.52Show/hide
Query:  SNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK-----------------IPSF
        S+ ERSA +ARREAA ILR VL G         +  L            FAL    L  L VIKDVL+ A++L++KWK+                  PS 
Subjt:  SNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK-----------------IPSF

Query:  GEAEVFLLQRDKVCL
        G+AE FL++  +  L
Subjt:  GEAEVFLLQRDKVCL
Arabidopsis top hitse value%identityAlignment
AT5G26180.1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein2.0e-0736.52Show/hide
Query:  SNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK-----------------IPSF
        S+ ERSA +ARREAA ILR VL G         +  L            FAL    L  L VIKDVL+ A++L++KWK+                  PS 
Subjt:  SNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK-----------------IPSF

Query:  GEAEVFLLQRDKVCL
        G+AE FL++  +  L
Subjt:  GEAEVFLLQRDKVCL
AT5G26180.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein2.0e-0736.52Show/hide
Query:  SNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK-----------------IPSF
        S+ ERSA +ARREAA ILR VL G         +  L            FAL    L  L VIKDVL+ A++L++KWK+                  PS 
Subjt:  SNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLC---------SIFALA--VLLDLPVIKDVLEAADLLSNKWKK-----------------IPSF

Query:  GEAEVFLLQRDKVCL
        G+AE FL++  +  L
Subjt:  GEAEVFLLQRDKVCL

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAACGCGGAGCGTTCGGCATATTTCGCGAGGAGAGAGGCGGCGAAGATATTGCGGCGAGTTCTTGAAGGATCAACGTCGAGCTGTCGCTTCAATCAAGTCGCTCG
TTTATGCTCCATCTTTGCTTTGGCTGTTTTACTAGACCTCCCTGTAATCAAGGATGTACTGGAGGCTGCTGATTTATTGAGCAATAAATGGAAGAAAATTCCTTCATTTG
GCGAGGCAGAGGTGTTTCTCTTGCAGCGAGATAAAGTCTGTCTTGACTTTTGTTCTTGGTACAGAAGGATGACATGGTTCCTAACCTCTTGGTACTCCCTCCAGGCAGTG
ATTTACATGATCATCCTCTGGTTGCGAAAATGGGAGCATCTTCATGCAAAAGTTTTGCATGGGGATTTCCTTGATCTCAATCCAGAAGATCCTTCATTATCCAAACGGCG
TGGTCTCCCAATTTTTGCAGGCGCACACACTACAGAGGCAACCCACATTACAGACATTACCACACAAAACACCACCAAAAAGGAAGAAAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAACGCGGAGCGTTCGGCATATTTCGCGAGGAGAGAGGCGGCGAAGATATTGCGGCGAGTTCTTGAAGGATCAACGTCGAGCTGTCGCTTCAATCAAGTCGCTCG
TTTATGCTCCATCTTTGCTTTGGCTGTTTTACTAGACCTCCCTGTAATCAAGGATGTACTGGAGGCTGCTGATTTATTGAGCAATAAATGGAAGAAAATTCCTTCATTTG
GCGAGGCAGAGGTGTTTCTCTTGCAGCGAGATAAAGTCTGTCTTGACTTTTGTTCTTGGTACAGAAGGATGACATGGTTCCTAACCTCTTGGTACTCCCTCCAGGCAGTG
ATTTACATGATCATCCTCTGGTTGCGAAAATGGGAGCATCTTCATGCAAAAGTTTTGCATGGGGATTTCCTTGATCTCAATCCAGAAGATCCTTCATTATCCAAACGGCG
TGGTCTCCCAATTTTTGCAGGCGCACACACTACAGAGGCAACCCACATTACAGACATTACCACACAAAACACCACCAAAAAGGAAGAAAATTAA
Protein sequenceShow/hide protein sequence
MSNAERSAYFARREAAKILRRVLEGSTSSCRFNQVARLCSIFALAVLLDLPVIKDVLEAADLLSNKWKKIPSFGEAEVFLLQRDKVCLDFCSWYRRMTWFLTSWYSLQAV
IYMIILWLRKWEHLHAKVLHGDFLDLNPEDPSLSKRRGLPIFAGAHTTEATHITDITTQNTTKKEEN