CuGenDBv2

Gene ID	CmoCh01G018640
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	F-box protein GID2-like
Genome location	Cmo_Chr01:13537527..13538069
RNA-Seq Expression	CmoCh01G018640
Synteny	CmoCh01G018640
Gene Ontology terms	GO:0009740 - gibberellic acid mediated signaling pathway (biological process) GO:0009845 - seed germination (biological process) GO:0010162 - seed dormancy process (biological process) GO:0031146 - SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (biological process) GO:0005634 - nucleus (cellular component) GO:0019005 - SCF ubiquitin ligase complex (cellular component) GO:0005515 - protein binding (molecular function)
InterPro domains	IPR001810 - F-box domain IPR036047 - F-box-like domain superfamily IPR045118 - F-box only protein FBXO9/FBXO48

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6608444.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. sororia]

5.7e-97

98.9

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCE-GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
        MKRLVPDGDGERKMGKKLRVDSVDCE GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE-GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSV

Query:  VLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        VLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  VLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

KAG7037780.1 F-box protein GID2, partial [Cucurbita argyrosperma subsp. argyrosperma]

7.5e-97

98.35

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCE--GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKRLVPDGDGERKMGKKLRVDSVDCE  GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE--GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_022941417.1 F-box protein GID2-like [Cucurbita moschata]

2.7e-99

100

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_022982290.1 F-box protein GID2-like [Cucurbita maxima]

1.3e-96

97.28

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCE----GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE    GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE----GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

XP_023521607.1 F-box protein GID2-like [Cucurbita pepo subsp. pepo]

3.5e-94

94.68

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCE-------GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN
        MKRLVPDGDGERKMGKKLRVDSVDCE       GGGGGASDR GFVNLDDNLLFEV KHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE-------GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGN

Query:  QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA-SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  QQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASA-SSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2H5 F-box domain-containing protein

2.6e-79

81.38

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGG--ASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
        MKR+VPDG G+RKMGKK + ++ D   GGGG   SD+ GF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGG--ASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRS

Query:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSS--------PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        VVLALGGFRRLHSLFIWPLTKPQ+ S+S+S+SSSSSSS         WS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFSNR
Subjt:  VVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSS--------PWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1FA22 F-box protein GID2-like

1.5e-79

84.27

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKR+VP+G G+RK  KK R  S DC+  GGG SD+ GF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        LALGGFRRLHSLFIWPLTKPQ+ S+S+++SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNFS+R
Subjt:  LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1FMD6 F-box protein GID2-like

1.3e-99

100

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  LALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

A0A6J1ILD7 F-box protein GID2-like

4.4e-79

83.33

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
        MKR+VP+G G+RK  KK R  S DC+  GGG SD+ GF+NLDDNLLFEVFKHVDA TLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVV

Query:  LALGGFRRLHSLFIWPLTKPQAPSTSAS--ASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        LALGGFRRLHSLFIWPLTKPQ+ S+S+S  +SS+SSSSPWS FPAMIGSKPP RWGKDEVHLSLSLLSIRYYEKMNF +R
Subjt:  LALGGFRRLHSLFIWPLTKPQAPSTSAS--ASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

A0A6J1J293 F-box protein GID2-like

6.2e-97

97.28

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Query:  MKRLVPDGDGERKMGKKLRVDSVDCE----GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKRLVPDGDGERKMGKKLRVDSVDCE    GGGGGASDR GFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
Subjt:  MKRLVPDGDGERKMGKKLRVDSVDCE----GGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
        RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

SwissProt top hits

e value

%identity

Alignment

Q7XAK4 F-box protein GID2

1.0e-27

43.14

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Query:  GASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASAS
        G  ++P   +L ++L+FEV +  +A TLA AACVS+ W + AEDERLWE  C R WAN G   +QLR+VVL+LGGFRRLH+++I PL             
Subjt:  GASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASAS

Query:  SSSSSSPW--STFPAMIGSK-PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE
               W  +  P   G + PP R G+D+V LSLSL SI +++ M    +D+
Subjt:  SSSSSSPW--STFPAMIGSK-PPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

Q9LUB6 F-box protein SNE

5.0e-11

29.63

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Query:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW
        +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW

Query:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM

Q9STX3 F-box protein GID2

1.8e-45

52.75

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Query:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR   D    GD   +  KK++              +  GF NLD+NL++EV KHVDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QL
Subjt:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSL++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

Arabidopsis top hits

e value

%identity

Alignment

AT1G21760.1 F-box protein 7

2.1e-04

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Query:  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG
        L D LLFEVF  +    L  A+CV ++W  T  +   W   C + W   G
Subjt:  LDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTG

AT4G24210.1 F-box family protein

1.3e-46

52.75

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Query:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL
        MKR   D    GD   +  KK++              +  GF NLD+NL++EV KHVDA TLAM++CVSK WHKTA+DERLWELICTRHW N GCG  QL
Subjt:  MKRLVPD----GDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQL

Query:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR
        RSVVLALGGFRRLHSL++WPL+KP                            P  R+GKDE+ L+LSLLSIRYYEKM+F+ R
Subjt:  RSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNR

AT5G48170.1 F-box family protein

3.5e-12

29.63

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Query:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW
        +N   ++L E+ + +D ++L  AACV + W   A ++ +WE +C R  +     +  LRSVV ALGG+R L+ L I P                      
Subjt:  VNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLHSLFIWPLTKPQAPSTSASASSSSSSSPW

Query:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM
             ++   P   W +D++ LSLSL  + YYE++
Subjt:  STFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKM

Sequences

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CDS sequence

Show/hide CDS sequence

ATGAAGCGACTTGTTCCTGATGGCGATGGGGAGCGGAAGATGGGGAAAAAACTCAGGGTGGACTCTGTGGATTGTGAAGGAGGAGGAGGAGGCGCCTCCGACAGACCTGG
GTTTGTCAATTTGGATGATAATTTGCTGTTCGAGGTTTTTAAGCATGTGGATGCGACGACTCTGGCTATGGCGGCGTGTGTCAGCAAGCAATGGCACAAAACGGCGGAAG
ATGAGCGGCTTTGGGAGCTGATCTGTACCAGACACTGGGCCAACACCGGCTGCGGCAACCAACAACTCCGATCTGTAGTTCTAGCCCTCGGTGGCTTCCGTCGCCTCCAC
TCGCTCTTCATCTGGCCTCTTACCAAGCCCCAAGCCCCCTCCACATCTGCCTCAGCTTCCTCCTCATCGTCGTCGTCGCCTTGGTCTACGTTTCCGGCGATGATTGGGTC
GAAGCCACCGACCCGTTGGGGGAAGGATGAGGTCCATCTCTCGCTCTCACTTCTCTCAATTCGGTACTACGAGAAGATGAATTTCAGCAACAGAGACGAATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MKRLVPDGDGERKMGKKLRVDSVDCEGGGGGASDRPGFVNLDDNLLFEVFKHVDATTLAMAACVSKQWHKTAEDERLWELICTRHWANTGCGNQQLRSVVLALGGFRRLH
SLFIWPLTKPQAPSTSASASSSSSSSPWSTFPAMIGSKPPTRWGKDEVHLSLSLLSIRYYEKMNFSNRDE

CmoCh01G018640 (gene) of Cucurbita moschata (Rifu) v1 genome