CuGenDBv2

Gene ID	CmoCh01G018780
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L4
Genome location	Cmo_Chr01:13581850..13583385
RNA-Seq Expression	CmoCh01G018780
Synteny	CmoCh01G018780
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6608456.1 hypothetical protein SDJN03_01798, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-92

97.22

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYKARSR KFPDD MDC+QSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQA VMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVS+HRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

KAG7037793.1 hypothetical protein SDJN02_01424, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.0e-93

97.78

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYKARSR KFPDD MDC+QSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQA VMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

XP_022941538.1 uncharacterized protein LOC111446812 [Cucurbita moschata]

1.1e-95

100

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

XP_022982291.1 uncharacterized protein LOC111481167 [Cucurbita maxima]

5.0e-93

97.78

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYKARS+ KFPDD MDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQA VMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

XP_023523427.1 uncharacterized protein LOC111787641 [Cucurbita pepo subsp. pepo]

8.5e-93

97.78

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYKARSR KFPDD MDCKQSDLMEAEFSANGAVAGDSVRELLTLARQ INQRKPSQALQA VMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KZU1 Uncharacterized protein

2.0e-71

86.39

Show/hide

Query:  MDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEA-QPL
        MDC  SD+MEAEF +  A   DSVR LLTLARQFINQRKPSQALQA VMAMRTQGGDAAVFQSLHRA ELYR+RL+ETADVDQLAS+FAECAIAEA QPL
Subjt:  MDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEA-QPL

Query:  NPEPGEC--NMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        NPEP E   NMSSSSVVD H NSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
Subjt:  NPEPGEC--NMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

A0A6J1CPE8 uncharacterized protein LOC111012957

7.8e-76

81.11

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYK R + K  DD++D  +SD+MEAEF+++ A  GD+VRELLTLARQFINQR PSQALQA V AMRTQGGDAAVFQSLHRA ELYRTRL+E+ADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        +FAECAIAEAQPLNPEP E N+S  SV+DAHGNSILAETGRMQ+VMDAFSDGSSFICL+CGGLVSNHRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

A0A6J1FAR2 uncharacterized protein LOC111443615

8.9e-72

82.74

Show/hide

Query:  MDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEAQPLN
        MDC +SD+ME EF++N A  GDSVR+LLTLARQFI+QR P+QALQA VMAMRTQGGDAAVFQSLHRA E+YRTR +ETADVDQLAS+FAECAIAEAQPLN
Subjt:  MDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEAQPLN

Query:  PEPGECN--MSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        PEP + N  +S S VVDAHGNSILAETGRMQ+VMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCA+I
Subjt:  PEPGECN--MSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

A0A6J1FSD6 uncharacterized protein LOC111446812

5.2e-96

100

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

A0A6J1IYX7 uncharacterized protein LOC111481167

2.4e-93

97.78

Show/hide

Query:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
        MYKARS+ KFPDD MDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQA VMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS
Subjt:  MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLAS

Query:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
Subjt:  IFAECAIAEAQPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G47830.1 unknown protein

9.2e-45

60.4

Show/hide

Query:  SVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEAQPL---NPEPGECNMSSSSVV--DAH
        + R+ L+ AR+ ++Q +PSQALQA VMAMR QGGD AV Q L+R  ELY+ R++ETA +DQLASIFAECAI EAQPL    P   +    +   V  DAH
Subjt:  SVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEAQPL---NPEPGECNMSSSSVV--DAH

Query:  GNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI
        G SIL ++GR Q+++DAF+DGSSFICLQCGGLVS HR+DEHYAYWC+ +
Subjt:  GNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

AT5G47830.2 unknown protein

1.9e-37

62.6

Show/hide

Query:  MAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEAQPL---NPEPGECNMSSSSVV--DAHGNSILAETGRMQVVMDAFSDGSSFIC
        MAMR QGGD AV Q L+R  ELY+ R++ETA +DQLASIFAECAI EAQPL    P   +    +   V  DAHG SIL ++GR Q+++DAF+DGSSFIC
Subjt:  MAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEAQPL---NPEPGECNMSSSSVV--DAHGNSILAETGRMQVVMDAFSDGSSFIC

Query:  LQCGGLVSNHRKDEHYAYWCAQI
        LQCGGLVS HR+DEHYAYWC+ +
Subjt:  LQCGGLVSNHRKDEHYAYWCAQI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTATAAAGCAAGATCTCGAAGAAAATTCCCCGATGATTCCATGGACTGTAAACAGTCGGACTTGATGGAGGCTGAATTTTCGGCGAACGGAGCCGTCGCCGGCGATTC
TGTCCGCGAATTACTCACATTAGCTCGTCAATTCATCAATCAACGGAAGCCTTCTCAAGCCCTCCAAGCGTTTGTAATGGCAATGAGAACCCAAGGTGGGGATGCAGCAG
TCTTTCAATCGTTGCACCGTGCTGGTGAGCTGTACAGAACTCGATTGCGGGAAACTGCAGATGTTGATCAACTTGCTTCTATATTTGCAGAGTGTGCTATAGCTGAAGCT
CAGCCTCTGAACCCTGAACCTGGAGAATGTAACATGTCTAGCTCATCGGTTGTTGATGCTCACGGTAATTCTATACTGGCAGAAACTGGTAGGATGCAAGTTGTTATGGA
TGCATTCTCAGATGGGAGCAGTTTTATTTGTTTGCAATGTGGCGGTCTTGTTAGTAACCATCGCAAAGATGAGCACTATGCATATTGGTGTGCTCAGATCTAA

mRNA sequence

Show/hide mRNA sequence

ATTGAAGAGACGGATGATTGTGGAAATTGCAATTTTCCCACGAAAAAAGAAAGAAAAAGGGAAAAAAGAATCTGCCTTGGATTTCTCATGTATAAAGCAAGATCTCGAAG
AAAATTCCCCGATGATTCCATGGACTGTAAACAGTCGGACTTGATGGAGGCTGAATTTTCGGCGAACGGAGCCGTCGCCGGCGATTCTGTCCGCGAATTACTCACATTAG
CTCGTCAATTCATCAATCAACGGAAGCCTTCTCAAGCCCTCCAAGCGTTTGTAATGGCAATGAGAACCCAAGGTGGGGATGCAGCAGTCTTTCAATCGTTGCACCGTGCT
GGTGAGCTGTACAGAACTCGATTGCGGGAAACTGCAGATGTTGATCAACTTGCTTCTATATTTGCAGAGTGTGCTATAGCTGAAGCTCAGCCTCTGAACCCTGAACCTGG
AGAATGTAACATGTCTAGCTCATCGGTTGTTGATGCTCACGGTAATTCTATACTGGCAGAAACTGGTAGGATGCAAGTTGTTATGGATGCATTCTCAGATGGGAGCAGTT
TTATTTGTTTGCAATGTGGCGGTCTTGTTAGTAACCATCGCAAAGATGAGCACTATGCATATTGGTGTGCTCAGATCTAA

Protein sequence

Show/hide protein sequence

MYKARSRRKFPDDSMDCKQSDLMEAEFSANGAVAGDSVRELLTLARQFINQRKPSQALQAFVMAMRTQGGDAAVFQSLHRAGELYRTRLRETADVDQLASIFAECAIAEA
QPLNPEPGECNMSSSSVVDAHGNSILAETGRMQVVMDAFSDGSSFICLQCGGLVSNHRKDEHYAYWCAQI

CmoCh01G018780 (gene) of Cucurbita moschata (Rifu) v1 genome