CuGenDBv2

Gene ID	CmoCh01G018920
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	protein ROOT INITIATION DEFECTIVE 3
Genome location	Cmo_Chr01:13636210..13638264
RNA-Seq Expression	CmoCh01G018920
Synteny	CmoCh01G018920
Gene Ontology terms	GO:0006364 - rRNA processing (biological process) GO:0030174 - regulation of DNA-dependent DNA replication initiation (biological process) GO:0005656 - nuclear pre-replicative complex (cellular component) GO:0097344 - Rix1 complex (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7037821.1 Protein ROOT INITIATION DEFECTIVE 3, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.5e-25

66.97

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+GYGGSNAIIISSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

XP_022151059.1 protein ROOT INITIATION DEFECTIVE 3-like [Momordica charantia]

3.3e-25

66.06

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIVVGYGGSN+IIISSSVDRTC+V                      + GKLLRNIIF  I+DAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

XP_022941447.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita moschata]

1.5e-25

66.97

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+GYGGSNAIIISSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

XP_022982251.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita maxima]

1.5e-25

66.97

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+GYGGSNAIIISSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

XP_023521513.1 protein ROOT INITIATION DEFECTIVE 3 [Cucurbita pepo subsp. pepo]

1.9e-25

66.06

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+GYGGSNAII+SSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BU36 protein ROOT INITIATION DEFECTIVE 3

1.0e-24

66.06

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIVVGYGG NAIIISSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAK PSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

A0A5D3D9F7 Protein ROOT INITIATION DEFECTIVE 3

1.0e-24

66.06

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIVVGYGG NAIIISSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAK PSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

A0A6J1DDG0 protein ROOT INITIATION DEFECTIVE 3-like

1.6e-25

66.06

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIVVGYGGSN+IIISSSVDRTC+V                      + GKLLRNIIF  I+DAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

A0A6J1FMG7 protein ROOT INITIATION DEFECTIVE 3

7.2e-26

66.97

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+GYGGSNAIIISSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

A0A6J1IYT8 protein ROOT INITIATION DEFECTIVE 3

7.2e-26

66.97

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+GYGGSNAIIISSSVDRTC+V                      + GKLLRNIIF  IIDAI++ P E+V  GGGRDGKIYTAALNAKSPSSSD GL
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
        HILGSLSNQ
Subjt:  HILGSLSNQ

SwissProt top hits

e value

%identity

Alignment

Q9M3B4 Protein ROOT INITIATION DEFECTIVE 3

3.3e-12

42.2

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+ YGG NA+IISSS DRTC+V                      + GKLL+NIIF  +I+A+++ P   V   G RD KIY  A+NA    +S+ G 
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
         +LGS+S +
Subjt:  HILGSLSNQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G49180.1 Transducin/WD40 repeat-like superfamily protein

2.4e-13

42.2

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Query:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL
        TDIV+ YGG NA+IISSS DRTC+V                      + GKLL+NIIF  +I+A+++ P   V   G RD KIY  A+NA    +S+ G 
Subjt:  TDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIF-LIIDAISMGPDEYVLKGGGRDGKIYTAALNAKSPSSSDCGL

Query:  HILGSLSNQ
         +LGS+S +
Subjt:  HILGSLSNQ

Sequences

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CDS sequence

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ATGGCAAAGGGAAGCAAAACATTTGTATGCATAGTTTCACTGGGCATAATTTCCCTGTTTACTGATATTGTCGTTGGCTATGGAGGATCCAATGCTATTATAATC
TCTTCCTCTGTGGATCGTACTTGCGAGGTTCGGCACTCTATTGAACTTCAACATGCCATGTGCGATATATCAAATGTGTACAGGCATAAGTGTGGAGCTTATGGG
AAACTATTAAGAAATATCATATTTTTAATCATTGATGCAATTTCTATGGGTCCCGATGAATATGTCCTCAAGGGAGGTGGTAGAGATGGGAAAATATACACTGCT
GCGCTCAATGCTAAAAGCCCATCCAGCAGTGATTGTGGACTGCATATTCTCGGCTCATTGTCAAATCAGAGAATAAGAGGGAGAAGGTAG

mRNA sequence

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Protein sequence

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MAKGSKTFVCIVSLGIISLFTDIVVGYGGSNAIIISSSVDRTCEVRHSIELQHAMCDISNVYRHKCGAYGKLLRNIIFLIIDAISMGPDEYVLKGGGRDGKIYTA
ALNAKSPSSSDCGLHILGSLSNQRIRGRR

CmoCh01G018920 (gene) of Cucurbita moschata (Rifu) v1 genome