; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G018960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G018960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein DCL homolog, chloroplastic-like
Genome locationCmo_Chr01:13655409..13657822
RNA-Seq ExpressionCmoCh01G018960
SyntenyCmoCh01G018960
Gene Ontology termsGO:0009658 - chloroplast organization (biological process)
GO:1901259 - chloroplast rRNA processing (biological process)
GO:0009507 - chloroplast (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR044673 - Protein DCL-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608472.1 Protein DCL, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.8e-12498.23Show/hide
Query:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
        MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRAL TGPEGSRIRSHEECSSD LRKPVVPPAKDLAGLSEDEESSEESGDDDD E
Subjt:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE

Query:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
        EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYIT+RYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
Subjt:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS

Query:  LIRKKYPLHAESFILRHFRRRRNLRW
        LIRKKYPLHAESFILRHFRRRRNLRW
Subjt:  LIRKKYPLHAESFILRHFRRRRNLRW

KAG7037800.1 Protein DCL, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]2.4e-12497.79Show/hide
Query:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
        MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRAL TGPEGSRIRSHEECSSD LRKPVVPPAKDLAGLSEDEESSEESGDDDD E
Subjt:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE

Query:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
        EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKT+LERLLPYHPKYEKKVGCGIDYIT+RYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
Subjt:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS

Query:  LIRKKYPLHAESFILRHFRRRRNLRW
        LIRKKYPLHAESFILRHFRRRRNLRW
Subjt:  LIRKKYPLHAESFILRHFRRRRNLRW

XP_022940329.1 protein DCL homolog, chloroplastic-like [Cucurbita moschata]1.5e-126100Show/hide
Query:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
        MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
Subjt:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE

Query:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
        EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
Subjt:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS

Query:  LIRKKYPLHAESFILRHFRRRRNLRW
        LIRKKYPLHAESFILRHFRRRRNLRW
Subjt:  LIRKKYPLHAESFILRHFRRRRNLRW

XP_022982282.1 protein DCL homolog, chloroplastic-like [Cucurbita maxima]2.4e-12498.23Show/hide
Query:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
        MVMAIASILKPPPSVPFHSL PSFFKSSPVILCFPTHLMTSFHPSTRAL TGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
Subjt:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE

Query:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
        EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHP YEKKVGCGIDYIT+RYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
Subjt:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS

Query:  LIRKKYPLHAESFILRHFRRRRNLRW
        LIRKKYPLHAESFILRHFRRRRNLRW
Subjt:  LIRKKYPLHAESFILRHFRRRRNLRW

XP_023524488.1 protein DCL homolog, chloroplastic-like [Cucurbita pepo subsp. pepo]6.2e-12598.67Show/hide
Query:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
        MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRAL TGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
Subjt:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE

Query:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
        EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYIT+RYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
Subjt:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS

Query:  LIRKKYPLHAESFILRHFRRRRNLRW
        LIRKKYPLHAESFILRHFRR RNLRW
Subjt:  LIRKKYPLHAESFILRHFRRRRNLRW

TrEMBL top hitse value%identityAlignment
A0A1S3BVA4 protein DCL, chloroplastic1.2e-10083.04Show/hide
Query:  MAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEED
        MA+ASIL   P  PFHSLNP+FF SSP+ILCFPTH + SFHPSTRAL TGPEGSRIRSH+E SSDLLRKPVVPPAKDLAG SED++SSEESG+D++EE D
Subjt:  MAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEED

Query:  WVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI
        WVDWE+ ILEDTVPLV FVRMVLH+GKYE GDRL PEHEKTILERLLPYHP+ EKK+GCG+DYITV YHPD+ESSRCLFIVRKDGELVDFSYWKCIK LI
Subjt:  WVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI

Query:  RKKYPLHAESFILRHF-RRRRNLR
        RK YPL+AESFILRHF RRRRNLR
Subjt:  RKKYPLHAESFILRHF-RRRRNLR

A0A5A7VDC9 Protein DCL1.2e-10083.04Show/hide
Query:  MAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEED
        MA+ASIL   P  PFHSLNP+FF SSP+ILCFPTH + SFHPSTRAL TGPEGSRIRSH+E SSDLLRKPVVPPAKDLAG SED++SSEESG+D++EE D
Subjt:  MAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEED

Query:  WVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI
        WVDWE+ ILEDTVPLV FVRMVLH+GKYE GDRL PEHEKTILERLLPYHP+ EKK+GCG+DYITV YHPD+ESSRCLFIVRKDGELVDFSYWKCIK LI
Subjt:  WVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI

Query:  RKKYPLHAESFILRHF-RRRRNLR
        RK YPL+AESFILRHF RRRRNLR
Subjt:  RKKYPLHAESFILRHF-RRRRNLR

A0A6J1BTU2 protein DCL homolog, chloroplastic1.5e-10083.64Show/hide
Query:  MAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEED
        MA+AS+ KPPP  PFHSLNPSF  SSPVILCFP H MTS HPS RAL TGPEGSRIRSHEE SSDLLRKPVVPPAKD A +SED+E SEESG D +EEED
Subjt:  MAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEED

Query:  WVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI
        WVDWE+ ILEDTVPLV FVRMVLHSGKY  GDRLS EHEKTIL+RLLPYHP+ EKK+GCGIDYIT+ YHPD+ESSRCLFIVRKDGELVDFSYWKCIK LI
Subjt:  WVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI

Query:  RKKYPLHAESFILRHFRRRR
        RK YPLHAESFILRHFRRRR
Subjt:  RKKYPLHAESFILRHFRRRR

A0A6J1FJS0 protein DCL homolog, chloroplastic-like7.2e-127100Show/hide
Query:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
        MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
Subjt:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE

Query:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
        EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
Subjt:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS

Query:  LIRKKYPLHAESFILRHFRRRRNLRW
        LIRKKYPLHAESFILRHFRRRRNLRW
Subjt:  LIRKKYPLHAESFILRHFRRRRNLRW

A0A6J1IW88 protein DCL homolog, chloroplastic-like1.1e-12498.23Show/hide
Query:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
        MVMAIASILKPPPSVPFHSL PSFFKSSPVILCFPTHLMTSFHPSTRAL TGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE
Subjt:  MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEE

Query:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
        EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHP YEKKVGCGIDYIT+RYHPDYESSRCLFIVRKDGELVDFSYWKCIKS
Subjt:  EDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKS

Query:  LIRKKYPLHAESFILRHFRRRRNLRW
        LIRKKYPLHAESFILRHFRRRRNLRW
Subjt:  LIRKKYPLHAESFILRHFRRRRNLRW

SwissProt top hitse value%identityAlignment
Q42463 Protein DCL, chloroplastic1.7e-6166.29Show/hide
Query:  ALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSED---EESSEESGDDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTI
        A+ TG EG  IRS    +++LLRKPV+    +    SE+   EES +E G    + E WVDWE+ ILEDTVPLV FVRM+LHSGKY IGDRLSP+H++TI
Subjt:  ALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSED---EESSEESGDDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTI

Query:  LERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLIRKKYPLHAESFILRHFRRRR
        L+RLLPYHP+ +KK+G G+DYITV YHPD+E+SRCLFIVRKDGE VDFSYWKCIK LIRK YPL+A+SFILRHFR+RR
Subjt:  LERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLIRKKYPLHAESFILRHFRRRR

Q5D869 DNA-directed RNA polymerase V subunit 12.5e-2039.66Show/hide
Query:  ENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLIRKKY
        E  +L D  P++  +R ++H   Y  GD +S + +  +LE++L +HP+ E K+G G+D+ITV  H  +  SRC F+V  DG   DFSY K + + + KKY
Subjt:  ENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLIRKKY

Query:  PLHAESFILRHFRRRR
        P  AE FI ++F + R
Subjt:  PLHAESFILRHFRRRR

Q8L557 Protein EMBRYO DEFECTIVE 5142.3e-0540.68Show/hide
Query:  ILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI
        +L+ +   H + EKK+G GI    VR HP ++ SRC F+VR+D    DFS+ KC+  ++
Subjt:  ILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI

Q9C642 Protein DCL homolog, chloroplastic3.2e-6358.44Show/hide
Query:  MAIASILKPPPSVPFHSLNPSF--------FKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESG
        M++ASI   P S P  S  P F        F SSP+ L FP    TS  P  RAL T  +G++I + E   S+LLR+P +   +     SE+EE  EE  
Subjt:  MAIASILKPPPSVPFHSLNPSF--------FKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESG

Query:  DDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSY
         + DE   +VDWE+ ILE TVPLV FVRM+LHSGKY   DRLSPEHE+TI+E LLPYHP+ EKK+GCGIDYI V +HPD+ESSRC+FIVRKDGE+VDFSY
Subjt:  DDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSY

Query:  WKCIKSLIRKKYPLHAESFILRHFRRRRNLR
        WKCIK LI+KKYPL+A+SFILRHFR+RR  R
Subjt:  WKCIKSLIRKKYPLHAESFILRHFRRRRNLR

Arabidopsis top hitse value%identityAlignment
AT1G45230.1 Protein of unknown function (DUF3223)2.2e-6458.44Show/hide
Query:  MAIASILKPPPSVPFHSLNPSF--------FKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESG
        M++ASI   P S P  S  P F        F SSP+ L FP    TS  P  RAL T  +G++I + E   S+LLR+P +   +     SE+EE  EE  
Subjt:  MAIASILKPPPSVPFHSLNPSF--------FKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESG

Query:  DDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSY
         + DE   +VDWE+ ILE TVPLV FVRM+LHSGKY   DRLSPEHE+TI+E LLPYHP+ EKK+GCGIDYI V +HPD+ESSRC+FIVRKDGE+VDFSY
Subjt:  DDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSY

Query:  WKCIKSLIRKKYPLHAESFILRHFRRRRNLR
        WKCIK LI+KKYPL+A+SFILRHFR+RR  R
Subjt:  WKCIKSLIRKKYPLHAESFILRHFRRRRNLR

AT1G45230.2 Protein of unknown function (DUF3223)2.9e-6458.44Show/hide
Query:  MAIASILKPPPSVPFHSLNPSF--------FKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESG
        M++ASI   P S P  S  P F        F SSP+ L FP    TS  P  RAL T  +G++I + E   S+LLR+P +   +     SE+EE  EE  
Subjt:  MAIASILKPPPSVPFHSLNPSF--------FKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESG

Query:  DDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSY
         + DE   +VDWE+ ILE TVPLV FVRM+LHSGKY   DRLSPEHE+TI+E LLPYHP+ EKK+GCGIDYI V +HPD+ESSRC+FIVRKDGE+VDFSY
Subjt:  DDDDEEEDWVDWENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSY

Query:  WKCIKSLIRKKYPLHAESFILRHFRRRRNLR
        WKCIK LI+KKYPL+A+SFILRHFR+RR  R
Subjt:  WKCIKSLIRKKYPLHAESFILRHFRRRRNLR

AT2G40030.1 nuclear RNA polymerase D1B1.8e-2139.66Show/hide
Query:  ENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLIRKKY
        E  +L D  P++  +R ++H   Y  GD +S + +  +LE++L +HP+ E K+G G+D+ITV  H  +  SRC F+V  DG   DFSY K + + + KKY
Subjt:  ENIILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLIRKKY

Query:  PLHAESFILRHFRRRR
        P  AE FI ++F + R
Subjt:  PLHAESFILRHFRRRR

AT3G46630.1 Protein of unknown function (DUF3223)2.3e-3248.8Show/hide
Query:  EEEDWVDWENI---ILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYW
        E+ D+  W+N+   IL D  P+    + +LHS +Y  G+RL  E EK ++E+LLPYHP  + K+GCG+D+I V  HP +  SRCLF+VR DG  +DFSY 
Subjt:  EEEDWVDWENI---ILEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYW

Query:  KCIKSLIRKKYPLHAESFILRHFRR
        KC+++ +R KYP HAE FI  HF+R
Subjt:  KCIKSLIRKKYPLHAESFILRHFRR

AT5G62440.1 Protein of unknown function (DUF3223)1.6e-0640.68Show/hide
Query:  ILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI
        +L+ +   H + EKK+G GI    VR HP ++ SRC F+VR+D    DFS+ KC+  ++
Subjt:  ILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCATGGCCATTGCGTCCATTTTGAAGCCACCGCCATCTGTGCCCTTTCACTCCCTAAATCCAAGCTTCTTCAAATCTTCACCAGTCATCTTATGTTTTCCTACACA
TCTAATGACGTCGTTTCATCCATCCACTCGTGCCCTAAACACTGGCCCTGAAGGCAGTAGAATTCGGAGCCACGAAGAATGTAGCTCCGATTTGCTGCGGAAACCAGTTG
TTCCGCCGGCGAAGGACTTGGCTGGATTATCGGAGGATGAAGAGAGCAGCGAGGAGAGTGGAGATGACGATGACGAGGAAGAGGATTGGGTTGATTGGGAGAACATAATT
TTGGAGGATACTGTTCCTCTCGTTACCTTTGTGAGGATGGTTCTTCACTCTGGAAAATATGAAATTGGGGATAGGTTAAGCCCAGAGCACGAGAAAACAATTCTCGAAAG
GTTGCTTCCATATCATCCCAAGTATGAGAAGAAGGTTGGATGTGGGATTGATTATATCACGGTTAGATATCATCCTGATTATGAAAGCTCGAGATGTTTATTCATCGTCA
GGAAAGATGGTGAATTAGTTGATTTTTCATATTGGAAGTGCATCAAGAGTCTGATCAGAAAGAAGTATCCTCTTCATGCAGAAAGCTTCATTCTTAGGCATTTTCGACGT
AGACGCAATCTCCGTTGGTAA
mRNA sequenceShow/hide mRNA sequence
CCAAGTCCATGAGATTCATGATATTGTGACTGACCGTTAATGGTTCTTCTTCCTCCGTTTTCTCAGAGAAATTGGGAGAAAAACCATGTTCCGTAATCGTAGGCTACAAT
CTCAATCTCAGTAGTTTCAAATTCAAGCTCCTTGTCTCAATTGAAGAAGGGAATGGTCATGGCCATTGCGTCCATTTTGAAGCCACCGCCATCTGTGCCCTTTCACTCCC
TAAATCCAAGCTTCTTCAAATCTTCACCAGTCATCTTATGTTTTCCTACACATCTAATGACGTCGTTTCATCCATCCACTCGTGCCCTAAACACTGGCCCTGAAGGCAGT
AGAATTCGGAGCCACGAAGAATGTAGCTCCGATTTGCTGCGGAAACCAGTTGTTCCGCCGGCGAAGGACTTGGCTGGATTATCGGAGGATGAAGAGAGCAGCGAGGAGAG
TGGAGATGACGATGACGAGGAAGAGGATTGGGTTGATTGGGAGAACATAATTTTGGAGGATACTGTTCCTCTCGTTACCTTTGTGAGGATGGTTCTTCACTCTGGAAAAT
ATGAAATTGGGGATAGGTTAAGCCCAGAGCACGAGAAAACAATTCTCGAAAGGTTGCTTCCATATCATCCCAAGTATGAGAAGAAGGTTGGATGTGGGATTGATTATATC
ACGGTTAGATATCATCCTGATTATGAAAGCTCGAGATGTTTATTCATCGTCAGGAAAGATGGTGAATTAGTTGATTTTTCATATTGGAAGTGCATCAAGAGTCTGATCAG
AAAGAAGTATCCTCTTCATGCAGAAAGCTTCATTCTTAGGCATTTTCGACGTAGACGCAATCTCCGTTGGTAATACATGCAAGGTGAATGTAGTAGACTTTTGCTTGAGG
AAGGTGCTTGTAAAATTCAATCGTGTAAATCCTAACAGCTACCTCCATTTTTCCTGTCCCTGCCCTACCCCATGGACATATCTAGTATTATATATGAAAATCCCTCATTG
AATCATAATTAAGACGAAAAATCCGTTTTTAG
Protein sequenceShow/hide protein sequence
MVMAIASILKPPPSVPFHSLNPSFFKSSPVILCFPTHLMTSFHPSTRALNTGPEGSRIRSHEECSSDLLRKPVVPPAKDLAGLSEDEESSEESGDDDDEEEDWVDWENII
LEDTVPLVTFVRMVLHSGKYEIGDRLSPEHEKTILERLLPYHPKYEKKVGCGIDYITVRYHPDYESSRCLFIVRKDGELVDFSYWKCIKSLIRKKYPLHAESFILRHFRR
RRNLRW