; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G018970 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G018970
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCold regulated protein 27
Genome locationCmo_Chr01:13658477..13660305
RNA-Seq ExpressionCmoCh01G018970
SyntenyCmoCh01G018970
Gene Ontology termsGO:0009409 - response to cold (biological process)
GO:0042752 - regulation of circadian rhythm (biological process)
InterPro domainsIPR044678 - Cold-regulated protein 27/28


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608473.1 Cold-regulated protein 27, partial [Cucurbita argyrosperma subsp. sororia]2.2e-12896.73Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        ME+LPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN
        AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAAR+NKNVACKSPAISSRKRNLLPFG    +GPMRACNSDLSQH IYNN
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN

Query:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
Subjt:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

KAG7037801.1 hypothetical protein SDJN02_01432 [Cucurbita argyrosperma subsp. argyrosperma]2.1e-12695.88Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        ME+LPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN
        AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAAR+NK+VACKSPAISSRKRNLLPFG    +GPMRACNSDLSQH IYNN
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN

Query:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQV
        KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQ+
Subjt:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQV

XP_022940327.1 uncharacterized protein LOC111445977 isoform X1 [Cucurbita moschata]1.9e-132100Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVS
        AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVS
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVS

Query:  DQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        DQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
Subjt:  DQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

XP_022982275.1 uncharacterized protein LOC111481154 [Cucurbita maxima]6.4e-12896.33Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        ME+LPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN
        AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG    +GPMRACNSDLS+H IYNN
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN

Query:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        KE+SDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
Subjt:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

XP_023525276.1 uncharacterized protein LOC111788927 isoform X1 [Cucurbita pepo subsp. pepo]4.2e-12795.92Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        ME+LPPNLENLKPKETRTDSLIS LAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN
        AASHVHSHVGQFKVLRQGSWKNVNFEPTE+RPNLLNDY+ALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG    +GPMRACNSDLSQH IYNN
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN

Query:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
Subjt:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

TrEMBL top hitse value%identityAlignment
A0A6J1CJ78 uncharacterized protein LOC111011825 isoform X32.7e-8772.76Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        ME  PPN+EN+K  E +TDSL  E A D++TE PL  ESSSQGT+MTESVPSDWTDEKHH FLESMEASFVSQMFDSAHS G+  GKENSS TKLHGQ+Q
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRN-LLPFG----AGPMRACNSDLSQHCIYN
        +AS++HSH GQFKVLR+GSWKN+NFEPTE+RP++LND QALSRNPWIHHFRAARK KNVACKS AISS +RN   PFG    +GPMRAC+S LSQ  I +
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRN-LLPFG----AGPMRACNSDLSQHCIYN

Query:  NKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        N+EVSDQNFVD +REVE   KG+N C  KRV T ETN L NDQVVP
Subjt:  NKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

A0A6J1F6L8 uncharacterized protein LOC111442637 isoform X12.7e-8773.47Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        ME+LPPNLEN    ETRTDSLISELA DESTE  L  ESSS GT MT+SVPSDWTDEKHHLFLESME SFVSQMFDS HS G+   KENSS TKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAG----PMRACNSDLSQHCIYNN
        +ASHVHSH GQFKVLR+GSWKN+NFE TE+R NLLND+QALSRNPWIHHFRA RKNKNVACKS AI S  RNL P GA     P+RAC+SDLS   I +N
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAG----PMRACNSDLSQHCIYNN

Query:  KEVSDQNFVDGEREVEKVAKGSNDC-NTKRVKTSETNDLINDQVV
        +EVSDQNFVD +RE   V  GS+DC N KRV T ETN LIN+Q +
Subjt:  KEVSDQNFVDGEREVEKVAKGSNDC-NTKRVKTSETNDLINDQVV

A0A6J1FJA4 uncharacterized protein LOC111445977 isoform X19.3e-133100Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVS
        AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVS
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVS

Query:  DQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        DQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
Subjt:  DQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

A0A6J1FNZ0 uncharacterized protein LOC111445977 isoform X23.6e-108100Show/hide
Query:  MTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNP
        MTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNP
Subjt:  MTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNP

Query:  WIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        WIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
Subjt:  WIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

A0A6J1J278 uncharacterized protein LOC1114811543.1e-12896.33Show/hide
Query:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
        ME+LPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ
Subjt:  MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQ

Query:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN
        AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG    +GPMRACNSDLS+H IYNN
Subjt:  AASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFG----AGPMRACNSDLSQHCIYNN

Query:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
        KE+SDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP
Subjt:  KEVSDQNFVDGEREVEKVAKGSNDCNTKRVKTSETNDLINDQVVP

SwissProt top hitse value%identityAlignment
Q8L8T7 Cold-regulated protein 272.7e-1231.48Show/hide
Query:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-
        + +SS  +   E + ++WT+EKH L+L+SMEASFV Q+++S    G     EN S +   G  +  S       QFKVL  G W+ +N +  E R N   
Subjt:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-

Query:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKR
          N ++ L R+PWI H++   K +      P     + S+ K+ +   G A  ++  +S    H        EVSDQNFV+      +  KG N  + K 
Subjt:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKR

Query:  VKTSETNDLINDQVVP
             +     DQVVP
Subjt:  VKTSETNDLINDQVVP

Q8L983 Cold-regulated protein 281.4e-0525.54Show/hide
Query:  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVG
        D  +SE + +  +E+ L +   S  T  T    +D        WT+EKH+ +L+ +E+SFV Q++ S   GGT          +L       S+ H    
Subjt:  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVG

Query:  QFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGERE
        QF VL+ G W+ VNF   ++     +++               R ++N     P  S+    +             D+  H    + E S QNF + E E
Subjt:  QFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGERE

Query:  VEKVAKGSNDCNTKRVKTSETNDLINDQVVP
         E   KG      +R   ++ + L  DQVVP
Subjt:  VEKVAKGSNDCNTKRVKTSETNDLINDQVVP

Arabidopsis top hitse value%identityAlignment
AT4G33980.1 BEST Arabidopsis thaliana protein match is: cold regulated gene 27 (TAIR:AT5G42900.2)1.0e-0625.54Show/hide
Query:  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVG
        D  +SE + +  +E+ L +   S  T  T    +D        WT+EKH+ +L+ +E+SFV Q++ S   GGT          +L       S+ H    
Subjt:  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVG

Query:  QFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGERE
        QF VL+ G W+ VNF   ++     +++               R ++N     P  S+    +             D+  H    + E S QNF + E E
Subjt:  QFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGERE

Query:  VEKVAKGSNDCNTKRVKTSETNDLINDQVVP
         E   KG      +R   ++ + L  DQVVP
Subjt:  VEKVAKGSNDCNTKRVKTSETNDLINDQVVP

AT4G33980.2 FUNCTIONS IN: molecular_function unknown1.0e-0625.54Show/hide
Query:  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVG
        D  +SE + +  +E+ L +   S  T  T    +D        WT+EKH+ +L+ +E+SFV Q++ S   GGT          +L       S+ H    
Subjt:  DSLISELAMDESTEAPLQDESSSQGTRMTESVPSD--------WTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVG

Query:  QFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGERE
        QF VL+ G W+ VNF   ++     +++               R ++N     P  S+    +             D+  H    + E S QNF + E E
Subjt:  QFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGERE

Query:  VEKVAKGSNDCNTKRVKTSETNDLINDQVVP
         E   KG      +R   ++ + L  DQVVP
Subjt:  VEKVAKGSNDCNTKRVKTSETNDLINDQVVP

AT5G42900.1 cold regulated gene 271.9e-1331.48Show/hide
Query:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-
        + +SS  +   E + ++WT+EKH L+L+SMEASFV Q+++S    G     EN S +   G  +  S       QFKVL  G W+ +N +  E R N   
Subjt:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-

Query:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKR
          N ++ L R+PWI H++   K +      P     + S+ K+ +   G A  ++  +S    H        EVSDQNFV+      +  KG N  + K 
Subjt:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKR

Query:  VKTSETNDLINDQVVP
             +     DQVVP
Subjt:  VKTSETNDLINDQVVP

AT5G42900.2 cold regulated gene 271.9e-1331.48Show/hide
Query:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-
        + +SS  +   E + ++WT+EKH L+L+SMEASFV Q+++S    G     EN S +   G  +  S       QFKVL  G W+ +N +  E R N   
Subjt:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-

Query:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKR
          N ++ L R+PWI H++   K +      P     + S+ K+ +   G A  ++  +S    H        EVSDQNFV+      +  KG N  + K 
Subjt:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH--CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKR

Query:  VKTSETNDLINDQVVP
             +     DQVVP
Subjt:  VKTSETNDLINDQVVP

AT5G42900.3 cold regulated gene 278.6e-1432.09Show/hide
Query:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-
        + +SS  +   E + ++WT+EKH L+L+SMEASFV Q+++S    G     EN S +   G  +  S       QFKVL  G W+ +N +  E R N   
Subjt:  DESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVGQFKVLRQGSWKNVNFEPTEARPNLL-

Query:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH-CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRV
          N ++ L R+PWI H++   K +      P     + S+ K+ +   G A  ++  +S    H  I   +EVSDQNFV+      +  KG N  + K  
Subjt:  --NDYQALSRNPWIHHFRAARKNKNVACKSP-----AISSRKRNLLPFG-AGPMRACNSDLSQH-CIYNNKEVSDQNFVDGEREVEKVAKGSNDCNTKRV

Query:  KTSETNDLINDQVVP
            +     DQVVP
Subjt:  KTSETNDLINDQVVP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGAATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGA
CGAATCTTCTAGCCAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATTTGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGA
TGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGCCAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGC
CAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTTATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGAT
ACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAAGGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTT
GTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGAAGTGTCGGATCAGAACTTTGTTGATGGAGAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGAT
TGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTTGTTCCTTAA
mRNA sequenceShow/hide mRNA sequence
ACAACTGTGAAGGTTCTTTTGTCCCCAAACACGGCCTTTCGCTCTCTTCCTAAAGATCTCTCTCCACTGGCCCGCTTCCATTTTTCTTCTCCATCTCTCTCTCTCGCCAT
TGCAAATCTGGAGATAATCCTTCATCTTCTTCTGTTTTCATGGAGGTTTTGCCTCCAAATTTAGAGAATCTCAAGCCTAAAGAAACTCGGACCGACTCACTGATCTCTGA
ATTGGCCATGGACGAGTCAACCGAGGCTCCCCTACAGGACGAATCTTCTAGCCAGGGCACTCGTATGACGGAGTCTGTACCTTCTGATTGGACCGATGAGAAGCACCATT
TGTTCCTTGAATCCATGGAGGCATCTTTTGTCAGCCAGATGTTTGATTCTGCGCATTCAGGTGGTACCGGCTCCGGGAAGGAAAATTCATCATGGACAAAATTGCACGGC
CAAAGCCAGGCCGCTTCTCATGTCCACTCACATGTTGGCCAGTTTAAGGTTCTTCGACAAGGCAGCTGGAAGAATGTTAATTTTGAACCAACTGAAGCTCGGCCGAATTT
ATTGAATGATTACCAGGCTCTATCGCGCAATCCATGGATACATCACTTCAGAGCTGCTCGCAAAAACAAAAATGTTGCATGTAAAAGTCCAGCCATCAGTTCAAGAAAAA
GGAATTTGTTGCCATTTGGAGCAGGACCTATGCGTGCTTGTAACTCTGATTTGTCTCAGCATTGTATATACAACAATAAAGAAGTGTCGGATCAGAACTTTGTTGATGGA
GAAAGGGAAGTTGAAAAAGTTGCAAAGGGGAGCAATGATTGCAATACCAAAAGGGTAAAAACTTCAGAAACCAATGATTTGATCAACGACCAGGTTGTTCCTTAA
Protein sequenceShow/hide protein sequence
MEVLPPNLENLKPKETRTDSLISELAMDESTEAPLQDESSSQGTRMTESVPSDWTDEKHHLFLESMEASFVSQMFDSAHSGGTGSGKENSSWTKLHGQSQAASHVHSHVG
QFKVLRQGSWKNVNFEPTEARPNLLNDYQALSRNPWIHHFRAARKNKNVACKSPAISSRKRNLLPFGAGPMRACNSDLSQHCIYNNKEVSDQNFVDGEREVEKVAKGSND
CNTKRVKTSETNDLINDQVVP