; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G019030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G019030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein TIC 22, chloroplastic-like
Genome locationCmo_Chr01:13691143..13694118
RNA-Seq ExpressionCmoCh01G019030
SyntenyCmoCh01G019030
Gene Ontology termsGO:0015031 - protein transport (biological process)
GO:0009507 - chloroplast (cellular component)
InterPro domainsIPR007378 - Tic22-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608478.1 Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, partial [Cucurbita argyrosperma subsp. sororia]2.9e-3690.53Show/hide
Query:  MARVYVNLVRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        MARVYVNL         LKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  MARVYVNLVRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

XP_022982278.1 protein TIC 22, chloroplastic isoform X1 [Cucurbita maxima]3.6e-3493.1Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        V+ K+A L LKASDS+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

XP_022982279.1 protein TIC 22, chloroplastic isoform X2 [Cucurbita maxima]2.7e-3466.17Show/hide
Query:  FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS
        FV +SD      I        C R+  A  ++  VR +   L             LKASDS+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS
Subjt:  FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS

Query:  KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

XP_023525963.1 protein TIC 22, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo]1.6e-3494.25Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        V+ K+A L LKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

XP_023525964.1 protein TIC 22, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo]1.2e-3466.92Show/hide
Query:  FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS
        FV +SD      I        C R+  A  ++  VR +   L             LKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS
Subjt:  FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS

Query:  KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

TrEMBL top hitse value%identityAlignment
A0A6J1CN57 protein TIC 22, chloroplastic7.3e-3389.66Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        V+ K+A L LKASD+RSSFDGVPVFQSDLLIVKKKNKRYCPIYF KEDIE+EL KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

A0A6J1FFN8 protein TIC 22, chloroplastic-like2.5e-3390.8Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        V+ K+A L LKASD++SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKEL KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

A0A6J1IIY6 protein TIC 22, chloroplastic-like9.5e-3389.66Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        V+ K+A L LKASD++SSFDGVPVFQSDLLIVKK NKRYCPIYFTKEDIEKEL KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

A0A6J1J433 protein TIC 22, chloroplastic isoform X21.3e-3466.17Show/hide
Query:  FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS
        FV +SD      I        C R+  A  ++  VR +   L             LKASDS+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS
Subjt:  FVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANL------------WLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELS

Query:  KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  KVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

A0A6J1J4F6 protein TIC 22, chloroplastic isoform X11.7e-3493.1Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        V+ K+A L LKASDS+SSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

SwissProt top hitse value%identityAlignment
F4J469 Protein TIC 22-like, chloroplastic3.3e-0642.42Show/hide
Query:  FDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTS---QHIMVGSLEDVLKKM
        F GVPVFQS  LI++ +N  Y P++F KED+EK L + S     L  +     I V   ED++K M
Subjt:  FDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTS---QHIMVGSLEDVLKKM

Q9SZB2 Protein TIC 22, chloroplastic3.2e-2565.52Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        ++ K+A L LK+S +++ FDGVPVFQS+LL+V+KKN+RYCP+YF+KEDIE+ELSK ++ASRG    Q IMVGSLEDVL+KME++EKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

Q9ZST9 Protein TIC 22, chloroplastic1.8e-2873.56Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        V+ K+A L L+A+ +R SFDGVPVFQSDLL+VKKKNKRYCP+YF+KED+E ELSKVS++S+G+G SQHIMVGS EDVLKKMEL+EK+
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

Arabidopsis top hitse value%identityAlignment
AT3G23710.1 Tic22-like family protein2.3e-0742.42Show/hide
Query:  FDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTS---QHIMVGSLEDVLKKM
        F GVPVFQS  LI++ +N  Y P++F KED+EK L + S     L  +     I V   ED++K M
Subjt:  FDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTS---QHIMVGSLEDVLKKM

AT4G33350.1 Tic22-like family protein2.2e-2665.52Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        ++ K+A L LK+S +++ FDGVPVFQS+LL+V+KKN+RYCP+YF+KEDIE+ELSK ++ASRG    Q IMVGSLEDVL+KME++EKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN

AT4G33350.2 Tic22-like family protein3.2e-1244.83Show/hide
Query:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN
        ++ K+A L LK+S +++ FDGVPVFQS+LL+V+KKN+RYCP                             VGSLEDVL+KME++EKN
Subjt:  VRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSLEDVLKKMELNEKN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGATTCGTATGGCTTTCTGATTCGGTCGCTGCGACGAAAATTTTGGAATCGAATTCGGCTTTTCAGTGTCACAGATTAAATATGGCACGGGTTTATGTAAACCTTGT
ACGGTACAAGGATGCTAACTTGTGGCTCAAAGCCTCGGATTCCAGGAGCAGTTTTGATGGAGTTCCTGTTTTTCAGTCTGACCTTCTGATTGTGAAAAAGAAAAACAAGC
GTTATTGTCCTATATACTTTACTAAGGAAGATATAGAGAAGGAACTGTCGAAGGTCTCAAAGGCATCAAGGGGATTAGGAACTTCTCAACATATCATGGTCGGTAGTTTG
GAAGATGTTCTTAAGAAAATGGAGTTGAATGAGAAGAACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGATTCGTATGGCTTTCTGATTCGGTCGCTGCGACGAAAATTTTGGAATCGAATTCGGCTTTTCAGTGTCACAGATTAAATATGGCACGGGTTTATGTAAACCTTGT
ACGGTACAAGGATGCTAACTTGTGGCTCAAAGCCTCGGATTCCAGGAGCAGTTTTGATGGAGTTCCTGTTTTTCAGTCTGACCTTCTGATTGTGAAAAAGAAAAACAAGC
GTTATTGTCCTATATACTTTACTAAGGAAGATATAGAGAAGGAACTGTCGAAGGTCTCAAAGGCATCAAGGGGATTAGGAACTTCTCAACATATCATGGTCGGTAGTTTG
GAAGATGTTCTTAAGAAAATGGAGTTGAATGAGAAGAACTGAGCCTGGGAAGATCTAATTTTCATTCCACCTGGCAAAAGCCACTCTCAACTCATTCAAGAAGTGGGCAA
AGCATGACATAGGCTGTGGACTCAGCCAACAGACCACGACGGAGCATGGAGAGCTGATTCAGCTAACTGAGAATAAGCTTTAAGCAGAACAGAGTTCTGAGTGGATGAAA
TTGTTCACCCACTTTAGCAACAACGTCTTCACTCACCACGCATTCTTCAACCACGCTATTCGTTCAAGGGAACAAAAGTTTGATACTCTCACAACCCTGTAGTCATATCT
TCATGTTGAGATGAACGAAAGGGATCAATTCTGGATTGGCTGTTTCGGTGCAAGAATCCGGACCATTATGTCTCCTATAGATCAGAGGGAGTTAAAAGCTTAGAGGAATG
CCTTTATATATATTTTTTTTTGGTTGAATTATTAAGTTTAGTCTATTAAGTTTGAGTCTAATTTGATCATGAACTAAAGTCACTAGACGCATGATTATGTCCTCTGCCTC
TGTTGAAATGCTAGTGTAAGAACCAGGGAAGAAGGTGGTGATGAATAATGATGAGAAAAGGGATAATTGGTGTCGGAATTTGGGCATTATTTTGAAATGCAGAGTAGTGT
AGTTGAGGGACCAATCTGATTGCTGCCTCTGCACTCTTAGTACAAAAGCTTTGTTCAAACTTCCATTTTGTCTGTTTTATTGTATTATTTGTGTATACCATGTTTACTTT
TGAAGGGGAAGGAATAAAAATAATCC
Protein sequenceShow/hide protein sequence
MGFVWLSDSVAATKILESNSAFQCHRLNMARVYVNLVRYKDANLWLKASDSRSSFDGVPVFQSDLLIVKKKNKRYCPIYFTKEDIEKELSKVSKASRGLGTSQHIMVGSL
EDVLKKMELNEKN