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CmoCh01G019060 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G019060
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationCmo_Chr01:13700217..13700471
RNA-Seq ExpressionCmoCh01G019060
SyntenyCmoCh01G019060
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591370.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]1.5e-3188.75Show/hide
Query:  QPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYT
        QPRPKLSREQLSVIFRNHDGDGDGRLS TELT AFRYIGAFLPSYRA HAL +TDSD DGFIGEKDFE LVNY EKR YT
Subjt:  QPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYT

KAG6600743.1 Calcium-binding protein CML38, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2772.62Show/hide
Query:  MSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
        M   RPK+SR+QL VIFRNHD DGDGRLS+ ELT+AF YIGA LPS+RA HAL YTDSDRDGFI EKDFE L++Y EKR YT++
Subjt:  MSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV

KAG6608481.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]1.3e-40100Show/hide
Query:  MSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
        MSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
Subjt:  MSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV

KAG7024248.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]3.0e-3286.59Show/hide
Query:  QPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
        QPRPKLSREQLSVIFRNHDGDGDGRLS TELT AFRYIGAFLPSYRA HAL +TDSD DGFIGEKDFE LVNY EKR YT++
Subjt:  QPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV

KGN55185.1 hypothetical protein Csa_012915 [Cucumis sativus]1.4e-2981.48Show/hide
Query:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
        PR KLSREQL +IFRNHD D DGRLS TELTEAFRYIGAFLP+YRA HAL + DSDRDGFIGEKDFESLVNY E+R YTI+
Subjt:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV

TrEMBL top hitse value%identityAlignment
A0A0A0KZR6 Uncharacterized protein6.7e-3081.48Show/hide
Query:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
        PR KLSREQL +IFRNHD D DGRLS TELTEAFRYIGAFLP+YRA HAL + DSDRDGFIGEKDFESLVNY E+R YTI+
Subjt:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV

A0A5A7VDB9 Putative calcium-binding protein CML271.1e-2776.54Show/hide
Query:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV
        PR +LSREQL +IFRNHD D DGRLS TELTEAFRYIGAFLP YRA HAL + DSDRDGFI EKDFE LVNY E+R YT++
Subjt:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV

A0A6J1GK16 calmodulin-like5.2e-1452.78Show/hide
Query:  KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK
        KLSR Q+  IF  HD DGDG LS +ELT+AF + G+ +P Y+AH+ L Y D+D DG I E++ E LV+Y E+
Subjt:  KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK

A0A6J1GK54 calmodulin-like4.4e-1351.39Show/hide
Query:  KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK
        +LSR ++  IF  HD DGDG L+ +ELT+AF +IG+ LP Y+AH+ L Y D+D DG I E++ E LV+Y E+
Subjt:  KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK

A0A6J1KUW2 calmodulin-like5.2e-1452.78Show/hide
Query:  KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK
        KLSR Q+  IF  HD DGDG LS +ELT+AF + G+ +P Y+AH+ L Y D+D DG I E++ E LV+Y E+
Subjt:  KLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK

SwissProt top hitse value%identityAlignment
Q0DJV6 Probable calcium-binding protein CML181.1e-0539.66Show/hide
Query:  QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDF
        +L  +FR +D +GDG++SA EL    R +GA L        +   DSDRDGF+   +F
Subjt:  QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDF

Q39419 Polcalcin Bet v 48.5e-0639.39Show/hide
Query:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDF
        P+ K  RE+   IF+  D +GDG++SA EL EA + +G+  P     H +   D+D DGFI  ++F
Subjt:  PRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDF

Q6L4D4 Probable calcium-binding protein CML152.2e-0632.39Show/hide
Query:  SQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL
        ++PRP  + ++   +FR  D +GDGR+S  EL   FR +G  +        ++  DSD DG+I   +F ++
Subjt:  SQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL

Q8L3R2 Probable calcium-binding protein CML413.5e-0738.46Show/hide
Query:  SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLV
        S+E+L  +F + D DGDG++SA EL   F  +G ++    A  A+   D+D DG +G +DF  L+
Subjt:  SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLV

Q9LE22 Probable calcium-binding protein CML271.2e-0433.87Show/hide
Query:  EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL
        E+L  +F   D +GDG++S  EL   F+ +G        +  L   D+DRDG+I   +F +L
Subjt:  EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein8.8e-0633.87Show/hide
Query:  EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL
        E+L  +F   D +GDG++S  EL   F+ +G        +  L   D+DRDG+I   +F +L
Subjt:  EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL

AT1G18210.2 Calcium-binding EF-hand family protein8.8e-0633.87Show/hide
Query:  EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL
        E+L  +F   D +GDG++S  EL   F+ +G        +  L   D+DRDG+I   +F +L
Subjt:  EQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESL

AT1G76650.1 calmodulin-like 384.3e-0531.34Show/hide
Query:  QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK
        +L  +F   D + DGR+S  EL ++F  +G  L    A  A+R +D+D DG +  ++F  L+   ++
Subjt:  QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK

AT1G76650.3 calmodulin-like 384.3e-0531.34Show/hide
Query:  QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK
        +L  +F   D + DGR+S  EL ++F  +G  L    A  A+R +D+D DG +  ++F  L+   ++
Subjt:  QLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEK

AT3G50770.1 calmodulin-like 412.5e-0838.46Show/hide
Query:  SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLV
        S+E+L  +F + D DGDG++SA EL   F  +G ++    A  A+   D+D DG +G +DF  L+
Subjt:  SREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCAGCCGAGGCCGAAGCTTTCCCGGGAGCAACTCAGTGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGCTTGAGCGCCACCGAGCTCACGGAAGCCTT
CCGCTACATCGGCGCCTTTCTGCCGTCGTACAGAGCTCATCACGCTCTTCGTTACACGGATTCCGACAGGGATGGATTCATCGGCGAGAAGGATTTCGAATCGCTCGTCA
ATTATACCGAAAAACGACATTACACCATCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCAGCCGAGGCCGAAGCTTTCCCGGGAGCAACTCAGTGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGCTTGAGCGCCACCGAGCTCACGGAAGCCTT
CCGCTACATCGGCGCCTTTCTGCCGTCGTACAGAGCTCATCACGCTCTTCGTTACACGGATTCCGACAGGGATGGATTCATCGGCGAGAAGGATTTCGAATCGCTCGTCA
ATTATACCGAAAAACGACATTACACCATCGTTTGA
Protein sequenceShow/hide protein sequence
MSQPRPKLSREQLSVIFRNHDGDGDGRLSATELTEAFRYIGAFLPSYRAHHALRYTDSDRDGFIGEKDFESLVNYTEKRHYTIV