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CmoCh01G019070 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G019070
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionEF hand calcium-binding protein family
Genome locationCmo_Chr01:13701819..13702100
RNA-Seq ExpressionCmoCh01G019070
SyntenyCmoCh01G019070
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591370.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]9.4e-2776.47Show/hide
Query:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYT
        KSK  + R KLSREQLSVIFRNHDGDGDGRLS +ELT AFRYIG+F+PSYRA  AL H DS+ DGFI E++FELL+NYAEKRKYT
Subjt:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYT

KAG6608481.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]2.1e-2672.41Show/hide
Query:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV
        K+K S+ R KLSREQLSVIFRNHDGDGDGRLS +ELTEAFRYIG+F+PSYRA  AL + DS+ DGFI E++FE L+NY EKR YT+V
Subjt:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV

KAG6608482.1 Polcalcin Syr v 3, partial [Cucurbita argyrosperma subsp. sororia]5.5e-43100Show/hide
Query:  MNPTEEKSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV
        MNPTEEKSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV
Subjt:  MNPTEEKSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV

KAG7024248.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]1.4e-2775.86Show/hide
Query:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV
        KSK  + R KLSREQLSVIFRNHDGDGDGRLS +ELT AFRYIG+F+PSYRA  AL H DS+ DGFI E++FELL+NYAEKRKYTV+
Subjt:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV

KGN55185.1 hypothetical protein Csa_012915 [Cucumis sativus]3.3e-2467.82Show/hide
Query:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV
        KSK    R+KLSREQL +IFRNHD D DGRLS +ELTEAFRYIG+F+P+YRA  AL HADS+ DGFI E++FE L+NYAE+R+YT++
Subjt:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV

TrEMBL top hitse value%identityAlignment
A0A0A0KZR6 Uncharacterized protein1.6e-2467.82Show/hide
Query:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV
        KSK    R+KLSREQL +IFRNHD D DGRLS +ELTEAFRYIG+F+P+YRA  AL HADS+ DGFI E++FE L+NYAE+R+YT++
Subjt:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV

A0A438IT52 Uncharacterized protein7.5e-1455.26Show/hide
Query:  LSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTV
        L+ EQ+  IFR +D DGD RLS +EL EAF+++GS  P +RA +ALS AD+N DG+I+EEE   L+NYA K  Y V
Subjt:  LSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTV

A0A5A7UYC0 Putative calcium-binding protein CML105.7e-1451.28Show/hide
Query:  KSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEK
        ++  + +LSRE +  IFR HD DGDGRLS SE+ +AF + GS +P Y+A   ++HAD N DG+I EEE + L++YAEK
Subjt:  KSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEK

A0A5A7VDB9 Putative calcium-binding protein CML271.6e-2467.82Show/hide
Query:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV
        +SK    R++LSREQL +IFRNHD D DGRLS +ELTEAFRYIG+F+P YRA  AL HADS+ DGFI+E++FELL+NYAE+R+YTV+
Subjt:  KSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV

A0A5N6RM90 Uncharacterized protein7.5e-1450Show/hide
Query:  KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTV
        K+   + E L  IF+ +D +GDGRLS +EL +AFR++GS MP +RA + + HAD N DGF++EEE   L+NYA+K  Y+V
Subjt:  KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTV

SwissProt top hitse value%identityAlignment
P09485 Calcium-binding protein LPS1-alpha8.0e-0536.76Show/hide
Query:  SKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF
        S K    S +++  +F + D DG+GR+SP EL +  R I + +    A K +  AD + DG +N EEF
Subjt:  SKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF

P58171 Polcalcin Syr v 38.0e-0538.98Show/hide
Query:  QLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFE
        +L  IF+  D +GDG++S SEL E  + +GS  P     + ++  D++ DGFI+ EEF+
Subjt:  QLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFE

Q2QVI1 Probable calcium-binding protein CML281.2e-0537.7Show/hide
Query:  QLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL
        +L  +F+  D +GDGR++  EL E+F+  G F+P       +   D+N DG ++ EEF LL
Subjt:  QLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL

Q6L4D4 Probable calcium-binding protein CML153.6e-0533.82Show/hide
Query:  SKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF
        +K R   + ++   +FR  D +GDGR+S +EL   FR +G  +      + +  ADS+ DG+I+  EF
Subjt:  SKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF

Q8RZB5 Probable calcium-binding protein CML102.8e-0537.1Show/hide
Query:  EQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL
        E++  +FR  D +GDGR+S SEL   F  +G         + ++ AD++ DGFI+ +EF  L
Subjt:  EQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein1.7e-0533.87Show/hide
Query:  EQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL
        E+L  +F   D +GDG++S  EL   F+ +G+        + L   D++ DG+IN +EF  L
Subjt:  EQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL

AT1G18210.2 Calcium-binding EF-hand family protein1.7e-0533.87Show/hide
Query:  EQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL
        E+L  +F   D +GDG++S  EL   F+ +G+        + L   D++ DG+IN +EF  L
Subjt:  EQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELL

AT1G24620.1 EF hand calcium-binding protein family2.2e-0533.33Show/hide
Query:  KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF
        +  K    +L  +F+  D +GDG++S  EL      +G  +P     KA++  D   DG+IN EEF
Subjt:  KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF

AT3G50770.1 calmodulin-like 417.4e-0633.33Show/hide
Query:  KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF
        K  + S+E+L  +F + D DGDG++S  EL   F  +G ++    A +A++  D++ DG +  E+F
Subjt:  KRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF

AT4G03290.1 EF hand calcium-binding protein family1.3e-0534.48Show/hide
Query:  QLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF
        +L+ +F+  D DGDG+++  EL E+F+ +G  +P     + +   D N DG ++ EEF
Subjt:  QLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCCGACAGAAGAGAAAAGCAAGAAGTCGAAGAAGAGGTCGAAGCTATCAAGAGAGCAACTTAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGTCT
CAGCCCCTCTGAGCTCACCGAAGCTTTTCGATACATTGGTTCCTTTATGCCTTCGTACAGAGCTGGTAAAGCTCTTTCTCACGCTGATTCTAACAACGATGGATTCATCA
ACGAGGAGGAATTCGAATTACTCATCAATTATGCCGAAAAACGCAAATACACCGTCGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCCGACAGAAGAGAAAAGCAAGAAGTCGAAGAAGAGGTCGAAGCTATCAAGAGAGCAACTTAGCGTAATCTTCAGAAACCACGACGGCGATGGCGACGGCCGTCT
CAGCCCCTCTGAGCTCACCGAAGCTTTTCGATACATTGGTTCCTTTATGCCTTCGTACAGAGCTGGTAAAGCTCTTTCTCACGCTGATTCTAACAACGATGGATTCATCA
ACGAGGAGGAATTCGAATTACTCATCAATTATGCCGAAAAACGCAAATACACCGTCGTTTGA
Protein sequenceShow/hide protein sequence
MNPTEEKSKKSKKRSKLSREQLSVIFRNHDGDGDGRLSPSELTEAFRYIGSFMPSYRAGKALSHADSNNDGFINEEEFELLINYAEKRKYTVV