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CmoCh01G019730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G019730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 3
Genome locationCmo_Chr01:13990842..13991639
RNA-Seq ExpressionCmoCh01G019730
SyntenyCmoCh01G019730
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147867.1 protein RADIALIS-like 3 [Cucumis sativus]1.7e-3681.91Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

XP_022138113.1 protein RADIALIS-like 3 [Momordica charantia]6.1e-3476.34Show/hide
Query:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        + GS WTAKQNK+FENALA+YD+DTP+RW+NLARAVGGKTAEEVKRHYE LV+DVNKIE+GQVPFP Y KS     GF F+DEE+RMRSL+LH
Subjt:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

XP_022941099.1 protein RADIALIS-like 3 [Cucurbita moschata]2.4e-46100Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

XP_022981878.1 protein RADIALIS-like 3 [Cucurbita maxima]1.6e-4598.94Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAG GFRFVDEEQRMRSLQLH
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

XP_038905673.1 protein RADIALIS-like 3 [Benincasa hispida]4.5e-3784.04Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF FVDEEQRMRSL+LH
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

TrEMBL top hitse value%identityAlignment
A0A0A0LGK8 SANT domain-containing protein8.3e-3781.91Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        M SGS WTAKQNK+FENALAIYD+DTPERW NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQRMRSLQL+
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

A0A5D3D7Z0 Protein RADIALIS-like 31.5e-3381.61Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQR
        M SGS WTAKQNK+FENALAIYD+DTPERW+NLARAVGGKTAEEVKRHYE LVEDVNKIE+GQVPFP Y +S PA  GF F+D+EQR
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQR

A0A6J1CC55 protein RADIALIS-like 33.0e-3476.34Show/hide
Query:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        + GS WTAKQNK+FENALA+YD+DTP+RW+NLARAVGGKTAEEVKRHYE LV+DVNKIE+GQVPFP Y KS     GF F+DEE+RMRSL+LH
Subjt:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

A0A6J1FM85 protein RADIALIS-like 31.2e-46100Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

A0A6J1J3A1 protein RADIALIS-like 37.5e-4698.94Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH
        MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAG GFRFVDEEQRMRSLQLH
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.4e-2561.54Show/hide
Query:  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL
        S   WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE+G VPFP Y  S     G R   EE+RMR+++L
Subjt:  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL

Q58FS3 Transcription factor RADIALIS3.9e-2357.14Show/hide
Query:  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL
        SG  W+AK+NK FE ALA+YD+DTP+RW N+ARAV G+T EEVK+HYE LVED+  IESG+VPFP Y       TG     +E+R R+L++
Subjt:  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL

Q6NNN0 Protein RADIALIS-like 33.3e-2266.67Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAY
        M+S + WT K+NK+FE ALA YD+DTP+RW+N+ARAVGGK+AEEV+RHYE L+ DVN IESG+ P P Y
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAY

Q8GW75 Protein RADIALIS-like 51.9e-2259.52Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDE
        M+S S WT+KQNKMFE ALA+YD+DTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y K+   G+  R +D+
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDE

Q9SIJ5 Protein RADIALIS-like 27.0e-2557Show/hide
Query:  MASGS-------KWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL
        MASGS        WT KQNK FE ALA+YD+DTP+RW+N+ARAVGGKT EE KR Y+ LV D+  IE+G VPFP Y  +       R  DEE+RMRS++L
Subjt:  MASGS-------KWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.4e-2359.52Show/hide
Query:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDE
        M+S S WT+KQNKMFE ALA+YD+DTP+RW N+A+AVG K+AEEVKRHY+ LVED+  IE   VP P Y K+   G+  R +D+
Subjt:  MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDE

AT1G75250.1 RAD-like 61.5e-2265.28Show/hide
Query:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSE
        +S S WT  QNKMFE ALA+YD+DTP+RW+N+A+AVGGKT EEVKRHY+ LVED+  IE+G+VP P Y   E
Subjt:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSE

AT1G75250.2 RAD-like 65.2e-2354.35Show/hide
Query:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL
        +S S WT  QNKMFE ALA+YD+DTP+RW+N+A+AVGGKT EEVKRHY+ LVED+  IE+G+VP P Y   E         D  ++M++L++
Subjt:  ASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL

AT2G21650.1 Homeodomain-like superfamily protein5.0e-2657Show/hide
Query:  MASGS-------KWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL
        MASGS        WT KQNK FE ALA+YD+DTP+RW+N+ARAVGGKT EE KR Y+ LV D+  IE+G VPFP Y  +       R  DEE+RMRS++L
Subjt:  MASGS-------KWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL

AT4G39250.1 RAD-like 11.0e-2661.54Show/hide
Query:  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL
        S   WTAKQNK FE ALA YD+DTP RW N+A+ VGGKT EEVKRHYE LV+D+N IE+G VPFP Y  S     G R   EE+RMR+++L
Subjt:  SGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCTGGATCGAAATGGACGGCGAAACAGAACAAAATGTTCGAAAATGCTTTAGCCATCTACGACAGGGACACGCCGGAGCGGTGGAACAACCTCGCCAGAGCCGT
CGGCGGGAAGACGGCGGAGGAAGTGAAACGGCACTACGAGAATCTCGTTGAAGACGTCAACAAGATCGAAAGTGGCCAAGTTCCTTTCCCCGCTTACACAAAATCCGAAC
CCGCCGGCACAGGATTTCGCTTTGTTGACGAAGAACAGCGGATGAGGAGTCTACAGTTGCATTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCTGGATCGAAATGGACGGCGAAACAGAACAAAATGTTCGAAAATGCTTTAGCCATCTACGACAGGGACACGCCGGAGCGGTGGAACAACCTCGCCAGAGCCGT
CGGCGGGAAGACGGCGGAGGAAGTGAAACGGCACTACGAGAATCTCGTTGAAGACGTCAACAAGATCGAAAGTGGCCAAGTTCCTTTCCCCGCTTACACAAAATCCGAAC
CCGCCGGCACAGGATTTCGCTTTGTTGACGAAGAACAGCGGATGAGGAGTCTACAGTTGCATTAAGTATGAATTTGGGATGAATTTTCAATTTAAACTTGCAATGTTGAA
CACAGGCAGGCTTTAGTTACTGTGAAGGCCAAATGTAGCTACTTTTCTTCAGCCGTATTTACTGTATTTTCTAGTCTTTGTCCCTTTCTCATGAGCTGTCATCCCAAATT
GTTCTATATTTAATGAATACATTAC
Protein sequenceShow/hide protein sequence
MASGSKWTAKQNKMFENALAIYDRDTPERWNNLARAVGGKTAEEVKRHYENLVEDVNKIESGQVPFPAYTKSEPAGTGFRFVDEEQRMRSLQLH