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CmoCh01G019780 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G019780
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionprotein RADIALIS-like 3
Genome locationCmo_Chr01:14007212..14008587
RNA-Seq ExpressionCmoCh01G019780
SyntenyCmoCh01G019780
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005737 - cytoplasm (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608542.1 Protein RADIALIS-like 3, partial [Cucurbita argyrosperma subsp. sororia]7.5e-5099.05Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQ
        TKSFQ
Subjt:  TKSFQ

XP_022155868.1 protein RADIALIS-like 4 [Momordica charantia]2.6e-3490.7Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+A GFYSSWTKRENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELL RDV KIEAGQVQIPLYKN GYNG
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

XP_022940511.1 protein RADIALIS-like 3 [Cucurbita moschata]6.3e-57100Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQCKMLKKNLKLQ
        TKSFQCKMLKKNLKLQ
Subjt:  TKSFQCKMLKKNLKLQ

XP_022981879.1 protein RADIALIS-like 4 [Cucurbita maxima]1.6e-5598.28Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVN+IEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQCKMLKKNLKLQ
        TKSFQCKMLKKNLKLQ
Subjt:  TKSFQCKMLKKNLKLQ

XP_023525025.1 protein RADIALIS-like 4 [Cucurbita pepo subsp. pepo]5.4e-5699.14Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQCKMLKKNLKLQ
        TKSFQCKMLKKNLKLQ
Subjt:  TKSFQCKMLKKNLKLQ

TrEMBL top hitse value%identityAlignment
A0A0A0LGL4 Uncharacterized protein1.4e-3387.21Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+ HGFYSSWTK+ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

A0A5A7TE80 Protein RADIALIS-like 31.4e-3387.21Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+ HGFYSSWTK+ENKKFEEALAF+D+DTPDRFE VARAVGGGKTAEE RRLYELLVRDV KIEAGQVQIPLYKN G NG
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

A0A6J1DP29 protein RADIALIS-like 41.3e-3490.7Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG
        MASSS T+A GFYSSWTKRENKKFEEALAFYDQDTPDRFE VARAVGGGKTAEE RRLYELL RDV KIEAGQVQIPLYKN GYNG
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNG

A0A6J1FIP0 protein RADIALIS-like 33.1e-57100Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQCKMLKKNLKLQ
        TKSFQCKMLKKNLKLQ
Subjt:  TKSFQCKMLKKNLKLQ

A0A6J1J319 protein RADIALIS-like 47.6e-5698.28Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
        MASSSRTTAHGFYSSWT RENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVN+IEAGQVQIPLYKNVGYNGGPPEAISYLLNISS
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISS

Query:  TKSFQCKMLKKNLKLQ
        TKSFQCKMLKKNLKLQ
Subjt:  TKSFQCKMLKKNLKLQ

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 11.8e-1757.83Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG
        MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YELLV+D+N IE G V  P Y+  G
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG

Q1G3C4 Protein RADIALIS-like 43.0e-1760.49Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN
        MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YELL+RDVN IE+G+   P Y+N
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN

Q6NNN0 Protein RADIALIS-like 31.4e-1962.35Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS+S +++    +SWT++ENK FE ALA YDQDTPDR+ NVARAV GGK+AEEVRR YELL+RDVN IE+G+   P Y++ G N
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

Q8GW75 Protein RADIALIS-like 57.4e-1656.1Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNV
        MASSS +++    SSWT ++NK FE ALA YD+DTPDR++NVA+AV G K+AEEV+R Y++LV D+  IE   V +P YK V
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNV

Q9SIJ5 Protein RADIALIS-like 21.5e-1657.65Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS S ++      SWT ++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+LLVRD+  IE G V  P YK    N
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 55.2e-1756.1Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNV
        MASSS +++    SSWT ++NK FE ALA YD+DTPDR++NVA+AV G K+AEEV+R Y++LV D+  IE   V +P YK V
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNV

AT1G75250.1 RAD-like 65.2e-1755.29Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS+SR++     S WT  +NK FE ALA YD+DTPDR+ NVA+AV GGKT EEV+R Y++LV D+  IE G+V +P YK    N
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

AT2G18328.1 RAD-like 42.1e-1860.49Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN
        MASSS +T     SSWT RE+K+FE ALA +D+DTPDR++ +ARAV GGK+ EEV+R YELL+RDVN IE+G+   P Y+N
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKN

AT2G21650.1 Homeodomain-like superfamily protein1.1e-1757.65Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN
        MAS S ++      SWT ++NK FE ALA YDQDTPDR+ NVARAV GGKT EE +R Y+LLVRD+  IE G V  P YK    N
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYN

AT4G39250.1 RAD-like 11.2e-1857.83Show/hide
Query:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG
        MASSS ++      SWT ++NK FE+ALA YDQDTP+R++NVA+ V GGKT EEV+R YELLV+D+N IE G V  P Y+  G
Subjt:  MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTTACTCATCCTGGACAAAAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGA
CCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGGAAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAG
TTCAAATACCCCTCTACAAGAACGTTGGATATAATGGCGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGTGTAAAATGCTCAAG
AAGAATTTAAAGCTTCAGTAA
mRNA sequenceShow/hide mRNA sequence
CTTTTCCCTAAGCTTCTCTGCCATATCCCAACGTCCATACCCACCATTCTCTGTCCCAAACTAACTGAAAATAATGGCCTCAAGCTCTCGCACGACGGCACATGGCTTTT
ACTCATCCTGGACAAAAAGGGAAAACAAAAAATTTGAGGAGGCATTAGCCTTCTATGACCAGGACACACCAGACCGCTTTGAGAACGTGGCGAGGGCTGTTGGTGGTGGG
AAAACAGCTGAGGAAGTAAGAAGGCTCTATGAGTTACTGGTGCGAGATGTCAACAAAATCGAAGCTGGTCAAGTTCAAATACCCCTCTACAAGAACGTTGGATATAATGG
CGGACCACCAGAGGCAATATCCTACTTGCTGAATATTTCCTCTACGAAATCATTCCAGTGTAAAATGCTCAAGAAGAATTTAAAGCTTCAGTAAAAAGTTGCCTGGAATG
CGTATAAACAGAAACAAGTTCTGTGCAGATGCAGATAAAAGTGAAATGTGTGTGCTACTGAATCAGTACAGCACACGTCAAAATGTAATAAATGAATAAATTCCAGCTAG
AATACTGTTGTAATTTAGCCAAAAACTGTACCTGCCTCATGCGGAATCCCTTTTGAAATGGCATACACCATATTTAATC
Protein sequenceShow/hide protein sequence
MASSSRTTAHGFYSSWTKRENKKFEEALAFYDQDTPDRFENVARAVGGGKTAEEVRRLYELLVRDVNKIEAGQVQIPLYKNVGYNGGPPEAISYLLNISSTKSFQCKMLK
KNLKLQ