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CmoCh01G019800 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G019800
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionDNA polymerase epsilon catalytic subunit A, putative
Genome locationCmo_Chr01:14016810..14021406
RNA-Seq ExpressionCmoCh01G019800
SyntenyCmoCh01G019800
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008466545.1 PREDICTED: uncharacterized protein LOC103503930 [Cucumis melo]1.4e-5479.86Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK
        MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K+ E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+K
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRL
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

XP_022940046.1 uncharacterized protein LOC111445795 [Cucurbita moschata]1.3e-73100Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

XP_022982140.1 uncharacterized protein LOC111481065 [Cucurbita maxima]6.7e-7399.28Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

XP_023525160.1 uncharacterized protein LOC111788844 [Cucurbita pepo subsp. pepo]8.7e-7398.55Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEA LDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANV+ASRL
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

XP_038898962.1 uncharacterized protein LOC120086405 [Benincasa hispida]3.3e-5682.61Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPA+DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE KK+E GG NLQRS+S+PPF T KG L+MESE +L+ KPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
         WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRL
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

TrEMBL top hitse value%identityAlignment
A0A1S3CST6 uncharacterized protein LOC1035039306.8e-5579.86Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK
        MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K+ E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+K
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRL
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

A0A5D3D820 Putative DNA polymerase epsilon catalytic subunit A6.8e-5579.86Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK
        MGSLMAGWDSP +DP+EVSHRRNKSLTKEEIEAFWKTKKQ+HEEHLRAILSPF++ EE K+ E  GNNLQRS+S+PPFNTRKG L+ ++SE +L+ KP+K
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLD-MESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        N WWRRSNWAFLNEPP  EGSGNSYVSQFHVAN+AASRL
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

A0A6J1DA26 uncharacterized protein LOC1110182416.8e-5581.16Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAIL-SPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKK
        MGSLMAGW   ASDPE+VSHRRNKSLT+EEIEAFWKTKKQL EEHL+AIL  P +S +EIKKVEFGG NLQRS+SVPP NT K F+ MESEA L+ KPKK
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAIL-SPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKK

Query:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASR
        NGWWRRSNWAFLNEPPV EGSGN YVSQFHVANVAAS+
Subjt:  NGWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASR

A0A6J1FHE8 uncharacterized protein LOC1114457956.5e-74100Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

A0A6J1J1T2 uncharacterized protein LOC1114810653.2e-7399.28Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKG LDMESEASLDNKPKKN
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
        GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVAASRL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G19530.1 unknown protein1.1e-2042.54Show/hide
Query:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN
        MGSLM+GWDS   DP+ V  RR KSLT+EEI+ FWKTKK+  EE         Q+  ++   E   +  +   SV              +   +N+ K +
Subjt:  MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKN

Query:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVA
        GWWR++ WAFLNEP   EG  N+YVSQF VA++A
Subjt:  GWWRRSNWAFLNEPPVIEGSGNSYVSQFHVANVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTCTTTAATGGCGGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGAC
GAAGAAACAGTTGCATGAAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCT
CTGTGCCTCCATTTAATACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTT
CTAAACGAACCGCCTGTGATTGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGATAATGTAAAGAAAAAAAAAAAGAA
GAGTAATTATATTAGAATTCTTCTGAATTCGAGTGGTCAGTTTATAATTTTATGGGGTTTTTTTTTAATTTTTTTAAATCATTTTATGACGTGGAAATTTTTGACAGCTA
TAGATGAGTTGGTGGTAAGAACAGTAAATCTGTCACTTTTCCCAAAAGTCAGCAAAGAACGACCGGGGAGAAGAAAATAA
mRNA sequenceShow/hide mRNA sequence
GTGTATATATATATATATATATTTGTTTGTAATAACAAACCAAATCAGATTATCAGCAATTTGAAGAGAGAAGAAAAGCTAGTATTTTGAGAGATGGGTTCTTTAATGGC
GGGTTGGGATTCTCCGGCGAGTGACCCAGAAGAAGTGAGTCACCGGAGGAACAAGTCATTGACGAAGGAAGAGATTGAAGCGTTTTGGAAGACGAAGAAACAGTTGCATG
AAGAACATCTTAGAGCCATTTTGAGTCCGTTTCAGAGCTGTGAGGAAATTAAGAAGGTGGAATTTGGTGGAAATAATCTTCAGCGGTCAAGCTCTGTGCCTCCATTTAAT
ACGAGGAAGGGTTTCTTGGACATGGAGTCTGAAGCTAGCTTAGACAACAAGCCCAAGAAAAATGGCTGGTGGAGAAGAAGTAACTGGGCATTTCTAAACGAACCGCCTGT
GATTGAAGGATCTGGCAACAGCTACGTCTCGCAGTTCCACGTGGCCAATGTTGCGGCCTCCAGACTTGATAATGTAAAGAAAAAAAAAAAGAAGAGTAATTATATTAGAA
TTCTTCTGAATTCGAGTGGTCAGTTTATAATTTTATGGGGTTTTTTTTTAATTTTTTTAAATCATTTTATGACGTGGAAATTTTTGACAGCTATAGATGAGTTGGTGGTA
AGAACAGTAAATCTGTCACTTTTCCCAAAAGTCAGCAAAGAACGACCGGGGAGAAGAAAATAA
Protein sequenceShow/hide protein sequence
MGSLMAGWDSPASDPEEVSHRRNKSLTKEEIEAFWKTKKQLHEEHLRAILSPFQSCEEIKKVEFGGNNLQRSSSVPPFNTRKGFLDMESEASLDNKPKKNGWWRRSNWAF
LNEPPVIEGSGNSYVSQFHVANVAASRLDNVKKKKKKSNYIRILLNSSGQFIILWGFFLIFLNHFMTWKFLTAIDELVVRTVNLSLFPKVSKERPGRRK