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CmoCh01G019960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G019960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionGTPase HflX
Genome locationCmo_Chr01:14097423..14102054
RNA-Seq ExpressionCmoCh01G019960
SyntenyCmoCh01G019960
Gene Ontology termsGO:0005525 - GTP binding (molecular function)
InterPro domainsIPR016496 - GTPase HflX
IPR027417 - P-loop containing nucleoside triphosphate hydrolase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608558.1 hypothetical protein SDJN03_01900, partial [Cucurbita argyrosperma subsp. sororia]8.7e-4392.59Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM----DSVVWVEALIQFDRGEFLSTVY
        MKNGNEFLLADTVGFIQKLPTMLVAAF ATLEEISELLLLVQLVDLGHPLA+QQIEAVDKVLLE DVSSIPRLM    D+VVWVEALIQFDRGEFLSTVY
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM----DSVVWVEALIQFDRGEFLSTVY

Query:  QVGVVEKT
        QVGVVEKT
Subjt:  QVGVVEKT

XP_022140776.1 uncharacterized protein LOC111011354 [Momordica charantia]2.4e-3259.09Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                             DS+VWVEALI FDRGE LSTV+QVGVVEKT  T
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

XP_022936680.1 uncharacterized protein LOC111443201 [Cucurbita moschata]6.9e-3258.44Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLL DTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                             DS+VWVEALI FDRGE LSTV+QVGVVEKT  T
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

XP_023535561.1 uncharacterized protein LOC111796964 isoform X1 [Cucurbita pepo subsp. pepo]6.9e-3258.44Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLL DTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                             DS+VWVEALI FDRGE LSTV+QVGVVEKT  T
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

XP_034200469.1 GTPase HflX isoform X2 [Prunus dulcis]3.1e-3252.05Show/hide
Query:  KTVQKLTLAVPIPVVSLMKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM---------
        K  +   L+VP+PVVSL KNG EFLL DTVGFIQKLPT +VAAFRATLEEISE  LLV +VD+ HPLA+QQI+AVDKVL E DVSSIPRLM         
Subjt:  KTVQKLTLAVPIPVVSLMKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM---------

Query:  --------------------------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                                              DS+VWVEALI F++GE LST+++VG+VE+T  T
Subjt:  --------------------------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

TrEMBL top hitse value%identityAlignment
A0A1S3CRG2 GTPase HflX isoform X24.4e-3259.33Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLL DTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  -----------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                         DS+VWVEALI FDRGE LSTV+QVGVVEK   T
Subjt:  -----------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

A0A5A7V7M9 GTPase HflX isoform X11.3e-3157.79Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLL DTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                             DS+VWVEALI FDRGE LSTV+QVGVVEK   T
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

A0A6J1CH24 uncharacterized protein LOC1110113541.1e-3259.09Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                             DS+VWVEALI FDRGE LSTV+QVGVVEKT  T
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

A0A6J1FEE4 uncharacterized protein LOC1114432013.3e-3258.44Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLL DTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                             DS+VWVEALI FDRGE LSTV+QVGVVEKT  T
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

A0A6J1IHX6 uncharacterized protein LOC1114764383.3e-3258.44Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        MKNGNEFLL DTVGFIQKLPTMLVAAFRATLEEISE  LLV +VD+ HPLA+QQIEAVDKVL E DVSSIP+LM                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST
                             DS+VWVEALI FDRGE LSTV+QVGVVEKT  T
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTVST

SwissProt top hitse value%identityAlignment
A0L4B2 GTPase HflX1.5e-0834.75Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDV---------SSIPRLMDSVVWVEALIQFDRGEF
        + +G   LL+DTVGFI++LP  LVAAF+ATLEE+    +L+ +VDL  P  ++ +E+V+ VL E +V         + I RL    +    L    RG+ 
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDV---------SSIPRLMDSVVWVEALIQFDRGEF

Query:  LSTVYQVGV-VEKTVSTY--LLGHASLSGVVVLKSPVKKWI
        +    Q G  VE  +S     +G A L   V+L     +W+
Subjt:  LSTVYQVGV-VEKTVSTY--LLGHASLSGVVVLKSPVKKWI

A6H294 GTPase HflX1.0e-0948.53Show/hide
Query:  FLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM
        FLL+DTVGFI+KLPT LV +F++TL+E+ E  LL+ +VD+ H   +  I+AV+K+LL+   +  P +M
Subjt:  FLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM

D3FTV4 GTPase HflX9.1e-1148.65Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM
        + +G   L++DTVGFIQ LPT LVA+FR+TLEE+ E  LL+ +VD  HP  +Q    V K++ E +  SIP+L+
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM

Q04PB3 GTPase HflX1.1e-0848.53Show/hide
Query:  EFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRL
        E +++DTVGFI  LP  L  AF+ATLEE+ +  LLV +VD+ +P    Q+EAV+K+L E ++S IP +
Subjt:  EFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRL

Q8RAS5 GTPase HflX5.0e-0943.24Show/hide
Query:  LMKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRL
        ++ +G E +L DTVGFI+KLP  LV AF++TLEE+    LL+ ++D+  P  D++I+ V+KVL +      PR+
Subjt:  LMKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRL

Arabidopsis top hitse value%identityAlignment
AT3G49725.1 GTP-binding protein, HflX3.1e-0646.77Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVL
        + +GN  LL+DTVGFI  LP  LV AF++TLEE+ E  LL+ +VD   P  ++    V  VL
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVL

AT5G57960.1 GTP-binding protein, HflX1.2e-2945.66Show/hide
Query:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------
        M+NG EFLL DTVGFIQKLPT LVAAFRATLEEI+E  LLV +VD+ HPLA+QQIEAV+KV+ E DVSSIP+L+                          
Subjt:  MKNGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLM--------------------------

Query:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTV----STYLLGHASLSGVVVLK
                             DS+VWVEAL+ FD+G+ LST+++VG+V++T      T +  H  L    +LK
Subjt:  ---------------------DSVVWVEALIQFDRGEFLSTVYQVGVVEKTV----STYLLGHASLSGVVVLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTATCAATGGCGTCTCGAGCACTGAATCAGAGCCTAAATCGTAGTTATGGTGTAGGGTTAATAAGAAAGAAGGTACAAGAAGATGGGGACAGCCTTGAGAGCGT
GTTTAAGCTGCGAAATGGAAGGGAGAATCATTTAGGATACCAAGATTCTTACGCCCCATATTTCGATGATTTTCTTTCATCTATGCTTCTTCTTCCGACTGCCCTACATG
ATTTAGGACATTGGTGTTCTCCGGAAGGAATTAGAGTCCGTCTGGATGCATCGAAAACAGTACAGAAGCTGACGCTTGCTGTTCCTATACCAGTAGTTTCTTTGATGAAA
AATGGAAACGAGTTTCTACTTGCCGACACTGTTGGTTTCATCCAAAAGTTACCAACTATGCTGGTTGCTGCATTCAGAGCAACATTAGAGGAGATATCAGAATTATTATT
GCTGGTTCAACTGGTGGACCTCGGCCATCCGCTGGCTGATCAACAGATAGAGGCTGTGGATAAAGTTCTTTTAGAATGGGATGTGTCGTCGATTCCGAGGTTGATGGACT
CAGTGGTTTGGGTAGAAGCCTTGATTCAGTTTGACAGAGGCGAGTTCTTGAGCACTGTGTATCAGGTTGGAGTGGTAGAGAAAACTGTAAGTACATATCTTTTGGGTCAC
GCATCATTATCAGGTGTCGTTGTCCTGAAGTCACCAGTAAAAAAATGGATTGGGTCGGCGATCTACCCTATGCAGGGCCAGAATCTGAGCCATAATTAG
mRNA sequenceShow/hide mRNA sequence
CTTTTGAAAGCGTCGGCCATTCTTTCCCGCCACACGGCGGACCGGGGGAAGAGTTTTTCCTTATGCGACTCTATTGGCCCAACGCGGAAGTGCTTTTCAACGGAGGCCTA
CCGTTGTGTCCTCTGATAATCTCCCTCTCCATGGATCTTTTGTAAAGCCCAATCAGGAAGTAGGAGGAACCGAAGAAGTTGATGAGCTTATCAATGGCGTCTCGAGCACT
GAATCAGAGCCTAAATCGTAGTTATGGTGTAGGGTTAATAAGAAAGAAGGTACAAGAAGATGGGGACAGCCTTGAGAGCGTGTTTAAGCTGCGAAATGGAAGGGAGAATC
ATTTAGGATACCAAGATTCTTACGCCCCATATTTCGATGATTTTCTTTCATCTATGCTTCTTCTTCCGACTGCCCTACATGATTTAGGACATTGGTGTTCTCCGGAAGGA
ATTAGAGTCCGTCTGGATGCATCGAAAACAGTACAGAAGCTGACGCTTGCTGTTCCTATACCAGTAGTTTCTTTGATGAAAAATGGAAACGAGTTTCTACTTGCCGACAC
TGTTGGTTTCATCCAAAAGTTACCAACTATGCTGGTTGCTGCATTCAGAGCAACATTAGAGGAGATATCAGAATTATTATTGCTGGTTCAACTGGTGGACCTCGGCCATC
CGCTGGCTGATCAACAGATAGAGGCTGTGGATAAAGTTCTTTTAGAATGGGATGTGTCGTCGATTCCGAGGTTGATGGACTCAGTGGTTTGGGTAGAAGCCTTGATTCAG
TTTGACAGAGGCGAGTTCTTGAGCACTGTGTATCAGGTTGGAGTGGTAGAGAAAACTGTAAGTACATATCTTTTGGGTCACGCATCATTATCAGGTGTCGTTGTCCTGAA
GTCACCAGTAAAAAAATGGATTGGGTCGGCGATCTACCCTATGCAGGGCCAGAATCTGAGCCATAATTAG
Protein sequenceShow/hide protein sequence
MSLSMASRALNQSLNRSYGVGLIRKKVQEDGDSLESVFKLRNGRENHLGYQDSYAPYFDDFLSSMLLLPTALHDLGHWCSPEGIRVRLDASKTVQKLTLAVPIPVVSLMK
NGNEFLLADTVGFIQKLPTMLVAAFRATLEEISELLLLVQLVDLGHPLADQQIEAVDKVLLEWDVSSIPRLMDSVVWVEALIQFDRGEFLSTVYQVGVVEKTVSTYLLGH
ASLSGVVVLKSPVKKWIGSAIYPMQGQNLSHN