; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh01G020070 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G020070
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionglycine-rich RNA-binding protein 2-like
Genome locationCmo_Chr01:14143069..14143843
RNA-Seq ExpressionCmoCh01G020070
SyntenyCmoCh01G020070
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6608571.1 hypothetical protein SDJN03_01913, partial [Cucurbita argyrosperma subsp. sororia]2.8e-8987.67Show/hide
Query:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNKT----------------------VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSK
        MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNK+                      VYGSRAEGLKNGTFLTFSELP GNAGEGRNSSGNTTTVEVSK
Subjt:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNKT----------------------VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSK

Query:  QNRGGGGGYGWGW-GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLH
        QNRGGGGGYGWGW GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYS+GEFAECMVKGRCRGMRLDCPLH
Subjt:  QNRGGGGGYGWGW-GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLH

Query:  CGGPCFYDCRHMCKAHCRR
        CGGPCFYDCR+MCKAHCRR
Subjt:  CGGPCFYDCRHMCKAHCRR

KAG7037889.1 hypothetical protein SDJN02_01520, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-9092.75Show/hide
Query:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNK-----TVYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGGGGGYGWGW----
        MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNK      VYGSRAEGLKNGTFLTFSELP GNAGEGRNSSGNTTTVEVSKQNRGGGGGYGWGW    
Subjt:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNK-----TVYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGGGGGYGWGW----

Query:  --GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHM
          GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYS+GEFAECMVKGRCRGMRLDCPLHCGGPCFYDCR+M
Subjt:  --GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHM

Query:  CKAHCRR
        CKAHCRR
Subjt:  CKAHCRR

XP_008455258.1 PREDICTED: keratin, type II cytoskeletal 1 [Cucumis melo]6.5e-5478.98Show/hide
Query:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN--RGGGGGYGWGW---GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWG
        +YGSR AEGL NG      TFLTFSELP  NAGE RNSS NT+TVEVSKQN   GGGGGYGWGW   GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWG
Subjt:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN--RGGGGGYGWGW---GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWG

Query:  CGGQP---KSGRR-GGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR
        CGG+P   K GRR   GRRKNV RK++YNE+DY +GEFA+CMVKGRCRGMRLDCPLHCGGPCFYDCR+MCKAHC R
Subjt:  CGGQP---KSGRR-GGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR

XP_011659711.1 keratin, type II cytoskeletal 2 epidermal [Cucumis sativus]1.6e-5277.91Show/hide
Query:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN-RGGGGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQ
        + GSR AEGL NG      TFLTFSELP  NAGE RNSS N+TTVEVSKQN  GGGGGYGWGWG GGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQ
Subjt:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN-RGGGGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQ

Query:  PKSGRRG----GGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR
        PKS R G     G  +NV  KR+Y+E+DY +GEFA+CMVKGRCRGMRLDCPLHCGGPCFYDCR+MCKAHC R
Subjt:  PKSGRRG----GGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR

XP_022940700.1 glycine-rich RNA-binding protein 2-like [Cucurbita moschata]1.1e-9391.59Show/hide
Query:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNKT-----------------VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGG
        MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNK+                 VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGG
Subjt:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNKT-----------------VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGG

Query:  GGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCF
        GGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCF
Subjt:  GGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCF

Query:  YDCRHMCKAHCRRL
        YDCRHMCKAHCRRL
Subjt:  YDCRHMCKAHCRRL

TrEMBL top hitse value%identityAlignment
A0A0A0K766 Uncharacterized protein7.8e-5377.91Show/hide
Query:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN-RGGGGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQ
        + GSR AEGL NG      TFLTFSELP  NAGE RNSS N+TTVEVSKQN  GGGGGYGWGWG GGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQ
Subjt:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN-RGGGGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQ

Query:  PKSGRRG----GGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR
        PKS R G     G  +NV  KR+Y+E+DY +GEFA+CMVKGRCRGMRLDCPLHCGGPCFYDCR+MCKAHC R
Subjt:  PKSGRRG----GGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR

A0A1S3C029 keratin, type II cytoskeletal 13.2e-5478.98Show/hide
Query:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN--RGGGGGYGWGW---GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWG
        +YGSR AEGL NG      TFLTFSELP  NAGE RNSS NT+TVEVSKQN   GGGGGYGWGW   GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWG
Subjt:  VYGSR-AEGLKNG------TFLTFSELPGGNAGEGRNSSGNTTTVEVSKQN--RGGGGGYGWGW---GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWG

Query:  CGGQP---KSGRR-GGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR
        CGG+P   K GRR   GRRKNV RK++YNE+DY +GEFA+CMVKGRCRGMRLDCPLHCGGPCFYDCR+MCKAHC R
Subjt:  CGGQP---KSGRR-GGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR

A0A5N6RB93 Uncharacterized protein1.7e-3159.77Show/hide
Query:  QNKTVYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGGGGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGC-GGQPKS
        QNKT         KN     +    GG  G G   SG            GGGGGYGWGWGGGGGGGGGG GGGGGGGGWGWGGGGGG++KWGC GGQPK 
Subjt:  QNKTVYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGGGGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGC-GGQPKS

Query:  GRR--------GGGRRKNVDRKRIYNEEDYSLGEFAECMVKG-RCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR
        G+         GG    +  RKR +N+EDY +GEFA+CM +G RCRGMRLDCPLHCGGPC YDC+HMCKAHCRR
Subjt:  GRR--------GGGRRKNVDRKRIYNEEDYSLGEFAECMVKG-RCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR

A0A6J1FRC8 glycine-rich RNA-binding protein 2-like5.3e-9491.59Show/hide
Query:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNKT-----------------VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGG
        MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNK+                 VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGG
Subjt:  MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNKT-----------------VYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGG

Query:  GGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCF
        GGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCF
Subjt:  GGGYGWGWGGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCF

Query:  YDCRHMCKAHCRRL
        YDCRHMCKAHCRRL
Subjt:  YDCRHMCKAHCRRL

A0A7J7HUV4 Uncharacterized protein5.3e-3369.85Show/hide
Query:  NTTTVEV----SKQNRGGGGG---YGWGW--GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAE
        N T V V    +K NRGGGGG   +GWGW  GGGGGGGGGGGGGGGGGGGWGWGGGGGGWW WGC    +  R+  G   ++  KR++N EDY LGEFA+
Subjt:  NTTTVEV----SKQNRGGGGG---YGWGW--GGGGGGGGGGGGGGGGGGGWGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAE

Query:  CMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR
        CMV+GRCRGMRLDCPLHCGGPCFYDC+ MCKAHCRR
Subjt:  CMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G75550.1 glycine-rich protein1.1e-1953.42Show/hide
Query:  EGRNSSGNTTTVEV-----SKQNRGGGGGYGWGW----GGGGGGGGGGGGGGGGGGGWGW--GGGGGGWWKWGCGGQPK-SGRRGGGRRKNVDRKRIYNE
        +  N+  N+TT  V      +   GG G Y WGW    GGGGGGGGGGGGGGGGGGGWGW  GGGGGGW+KWGCGG  K  GR G G             
Subjt:  EGRNSSGNTTTVEV-----SKQNRGGGGGYGWGW----GGGGGGGGGGGGGGGGGGGWGW--GGGGGGWWKWGCGGQPK-SGRRGGGRRKNVDRKRIYNE

Query:  EDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR
         ++   E+AEC  +G+C G RL+CP HCGG CFYDC  +CK HCRR
Subjt:  EDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACACTCGCAAAAGAAGTCGATTTGGTGAATGTGGGCAACAGTGCTTTAGTTAAGCGGTATGGCGTTGTTGATTTTGCAATGCAAGTGGGGGGACAGAACAAAACGGT
TTATGGGTCGAGAGCTGAGGGTTTGAAAAATGGCACTTTCTTAACATTCTCCGAGCTGCCAGGGGGAAATGCAGGGGAGGGGAGAAACAGTTCTGGTAATACTACTACGG
TTGAGGTTAGCAAGCAGAACAGGGGAGGAGGCGGTGGGTATGGGTGGGGATGGGGCGGAGGCGGTGGAGGTGGAGGTGGAGGGGGTGGAGGAGGTGGTGGTGGTGGTGGA
TGGGGATGGGGAGGAGGGGGAGGTGGGTGGTGGAAATGGGGTTGTGGTGGACAGCCAAAATCTGGCAGACGCGGCGGTGGGAGAAGGAAAAATGTAGACAGGAAGAGAAT
ATACAATGAGGAAGATTACAGTTTGGGAGAATTTGCGGAATGTATGGTGAAAGGAAGATGCAGAGGCATGAGATTGGACTGTCCGCTTCACTGCGGCGGGCCTTGCTTTT
ACGACTGTCGACACATGTGCAAGGCTCACTGCCGACGCCTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACACTCGCAAAAGAAGTCGATTTGGTGAATGTGGGCAACAGTGCTTTAGTTAAGCGGTATGGCGTTGTTGATTTTGCAATGCAAGTGGGGGGACAGAACAAAACGGT
TTATGGGTCGAGAGCTGAGGGTTTGAAAAATGGCACTTTCTTAACATTCTCCGAGCTGCCAGGGGGAAATGCAGGGGAGGGGAGAAACAGTTCTGGTAATACTACTACGG
TTGAGGTTAGCAAGCAGAACAGGGGAGGAGGCGGTGGGTATGGGTGGGGATGGGGCGGAGGCGGTGGAGGTGGAGGTGGAGGGGGTGGAGGAGGTGGTGGTGGTGGTGGA
TGGGGATGGGGAGGAGGGGGAGGTGGGTGGTGGAAATGGGGTTGTGGTGGACAGCCAAAATCTGGCAGACGCGGCGGTGGGAGAAGGAAAAATGTAGACAGGAAGAGAAT
ATACAATGAGGAAGATTACAGTTTGGGAGAATTTGCGGAATGTATGGTGAAAGGAAGATGCAGAGGCATGAGATTGGACTGTCCGCTTCACTGCGGCGGGCCTTGCTTTT
ACGACTGTCGACACATGTGCAAGGCTCACTGCCGACGCCTGTAA
Protein sequenceShow/hide protein sequence
MTLAKEVDLVNVGNSALVKRYGVVDFAMQVGGQNKTVYGSRAEGLKNGTFLTFSELPGGNAGEGRNSSGNTTTVEVSKQNRGGGGGYGWGWGGGGGGGGGGGGGGGGGGG
WGWGGGGGGWWKWGCGGQPKSGRRGGGRRKNVDRKRIYNEEDYSLGEFAECMVKGRCRGMRLDCPLHCGGPCFYDCRHMCKAHCRRL