CuGenDBv2

Gene ID	CmoCh01G020140
Organism	Cucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Genome location	Cmo_Chr01:14179955..14182363
RNA-Seq Expression	CmoCh01G020140
Synteny	CmoCh01G020140
Gene Ontology terms	GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
InterPro domains	IPR019716 - Ribosomal protein L53, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6591283.1 hypothetical protein SDJN03_13629, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-59

95.28

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTP QTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWPVIIPDEELN P PSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

XP_022139291.1 uncharacterized protein LOC111010210 [Momordica charantia]

7.4e-59

92.13

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWP++IP+EEL  P PSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

XP_022940323.1 uncharacterized protein LOC111445972 [Cucurbita moschata]

1.5e-64

100

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWPVIIPDEELNHPPPSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

XP_022974805.1 uncharacterized protein LOC111473560 isoform X1 [Cucurbita maxima]

3.6e-61

96.06

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWPVIIPDEELN P PSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

XP_022982466.1 uncharacterized protein LOC111481279 [Cucurbita maxima]

6.5e-63

97.64

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRT ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWPVIIPDEELNHPPPSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG5 Uncharacterized protein

2.6e-57

91.34

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLA CMEFLAQCNA KAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIR+MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
         WPVIIPDEEL  P   IKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

A0A6J1CC86 uncharacterized protein LOC111010210

3.6e-59

92.13

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDD PPQI VTFVNGVEEVFDATSTPAQTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWP++IP+EEL  P PSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

A0A6J1FNY6 uncharacterized protein LOC111445972

7.5e-65

100

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWPVIIPDEELNHPPPSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

A0A6J1IEW0 uncharacterized protein LOC111473560 isoform X1

1.7e-61

96.06

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRL SCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIR MILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWPVIIPDEELN P PSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

A0A6J1IZE5 uncharacterized protein LOC111481279

3.1e-63

97.64

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKV+IEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQI VTFVNGVEEVFDATSTPAQTIRT ILEKGQLLETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
        TWPVIIPDEELNHPPPSIKPRKAEDKQ
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G39600.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

5.3e-55

81.89

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Query:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE
        MLKFLSKVRIEFN LDPRLASC+EFLAQCNARKAKESNP CQ++VKRRTD+ PPQITVTFVNGVEE FDA +T AQ+IR MIL+KGQ LETEQMFREAGE
Subjt:  MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGE

Query:  TWPVIIPDEELNHPPPSIKPRKAEDKQ
         WPVIIPDEEL    P +KPRKAEDK+
Subjt:  TWPVIIPDEELNHPPPSIKPRKAEDKQ

Sequences

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CDS sequence

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ATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTTGGCGCAGTGTAATGCTCGGAAGGCCAAGGAATC
GAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATGGAGTCGAAGAGGTCTTCGACGCTACCTCTACTC
CTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGAGAAACTTGGCCGGTTATCATTCCCGATGAGGAG
CTTAATCACCCTCCTCCCAGTATCAAGCCAAGAAAAGCGGAAGACAAGCAGTAA

mRNA sequence

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AGAATTACATTTTCAATTAATTTTTCTCAAGAAACTCTCCGTTTCGGTCATAAACCCCCCCAAACTTACTCCCCTCCATAGGCTTCTTCTTGCACGCCCCAATCACTCTT
GTTGGAAGGTTGAGGCGAAAGGAATAAGCCGCAATGTTGAAGTTCCTCTCCAAAGTGAGAATCGAATTCAATGCCTTAGATCCACGCTTGGCATCTTGCATGGAATTCTT
GGCGCAGTGTAATGCTCGGAAGGCCAAGGAATCGAACCCGGCTTGCCAGTTGATCGTCAAGCGCCGAACCGACGACCACCCGCCCCAGATCACCGTCACCTTCGTCAATG
GAGTCGAAGAGGTCTTCGACGCTACCTCTACTCCTGCTCAAACAATCAGGACTATGATTCTTGAAAAGGGCCAACTCCTTGAGACCGAGCAAATGTTTCGAGAAGCTGGA
GAAACTTGGCCGGTTATCATTCCCGATGAGGAGCTTAATCACCCTCCTCCCAGTATCAAGCCAAGAAAAGCGGAAGACAAGCAGTAACACTGTCTCAATTGATCAACTTG
CGGATGTACCTGAAAGAAGAGGGAGTGCATTCTGTCCTCGCACCAAGTTATCAATTTCCGTGAAGTAGTAGTGCTGCTGGCTCTGAGATGTTTGTTCTAGGTTTTTTTCC
TACGGATGTTTATTGTTTTCTCCTCCCGCACCAAGTTCTAAACATGGATGCTGTGTTGTTTTTCATCAGCTATTTATTCATATAATAACTTGTTGCTAGCTAATACATGC
TTTGTGACAAGTTTCTTGATACCCAAATCAAAGCGCAAAGTCGACGAAAATTGAACAATGTTCACAGTAGGTGCCCGATTCTGGTACATCGAACACCAAGATGGATGAGT
TTCCATGATTTTGAATGAATAGAAATGCAAGATTAAAATCTC

Protein sequence

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MLKFLSKVRIEFNALDPRLASCMEFLAQCNARKAKESNPACQLIVKRRTDDHPPQITVTFVNGVEEVFDATSTPAQTIRTMILEKGQLLETEQMFREAGETWPVIIPDEE
LNHPPPSIKPRKAEDKQ

CmoCh01G020140 (gene) of Cucurbita moschata (Rifu) v1 genome