| GenBank top hits | e value | %identity | Alignment |
|---|
| KAG6591223.1 Small nuclear ribonucleoprotein SmD3b, partial [Cucurbita argyrosperma subsp. sororia] | 1.0e-51 | 84.85 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRGAVPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| XP_022151728.1 small nuclear ribonucleoprotein SmD3b-like [Momordica charantia] | 1.1e-50 | 83.33 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRG ATGRGA+PSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| XP_022937091.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita moschata] | 1.0e-51 | 84.85 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRGAVPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| XP_022940723.1 small nuclear ribonucleoprotein SmD3b-like isoform X1 [Cucurbita moschata] | 4.6e-52 | 85.61 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRGAVPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| XP_023522400.1 small nuclear ribonucleoprotein SmD3b-like [Cucurbita pepo subsp. pepo] | 3.0e-51 | 84.09 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRG VPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A6J1DDX8 Small nuclear ribonucleoprotein Sm D3 | 5.5e-51 | 83.33 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRG ATGRGA+PSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| A0A6J1F9D0 Small nuclear ribonucleoprotein Sm D3 | 4.9e-52 | 84.85 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRGAVPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| A0A6J1FQ35 Small nuclear ribonucleoprotein Sm D3 | 2.2e-52 | 85.61 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRGAVPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| A0A6J1IBE9 Small nuclear ribonucleoprotein Sm D3 | 4.9e-52 | 84.85 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDA+I
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRGAVPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| A0A6J1IVB4 Small nuclear ribonucleoprotein Sm D3 | 2.2e-52 | 85.61 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKI--------
Query: -----------KAQAAGRGGATGRGAVPSARR
KAQAAGRGGATGRGAVPSARR
Subjt: -----------KAQAAGRGGATGRGAVPSARR
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P62318 Small nuclear ribonucleoprotein Sm D3 | 1.0e-30 | 56.88 | Show/hide |
Query: SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGAT
S+G+P+K+LHEA GH+V+ E +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + K + AGRG A
Subjt: SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGAT
Query: GRGAVPSAR
A +AR
Subjt: GRGAVPSAR
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| P62320 Small nuclear ribonucleoprotein Sm D3 | 1.0e-30 | 56.88 | Show/hide |
Query: SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGAT
S+G+P+K+LHEA GH+V+ E +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + K + AGRG A
Subjt: SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGAT
Query: GRGAVPSAR
A +AR
Subjt: GRGAVPSAR
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| P62323 Small nuclear ribonucleoprotein Sm D3 | 1.0e-30 | 56.88 | Show/hide |
Query: SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGAT
S+G+P+K+LHEA GH+V+ E +GE+YRG +IE EDN NCQ+ NIT T +DG+V+QLE V+IRGSK+RF+++PDMLKNAPM K + K + AGRG A
Subjt: SLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGAT
Query: GRGAVPSAR
A +AR
Subjt: GRGAVPSAR
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| Q9LM92 Small nuclear ribonucleoprotein SmD3b | 2.1e-47 | 84.26 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRG
MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQLEHVFIRGSKVRFMVIPD+LK+APMFKRLDA+IK +++ G
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRG
Query: GATGRGAV
GRGA+
Subjt: GATGRGAV
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| Q9S7E6 Small nuclear ribonucleoprotein SmD3a | 2.5e-45 | 72.66 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAK---------
MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS VRF+VIPDMLKNAPMFK + K
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAK---------
Query: ------IKAQAAGRGGATGRGAVPSARR
++A+ GRG GRGAVP RR
Subjt: ------IKAQAAGRGGATGRGAVPSARR
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| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT1G20580.1 Small nuclear ribonucleoprotein family protein | 1.5e-48 | 84.26 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRG
MSRSLGIPVKLLHEA+GH+V+VELKSGELYRGSMIECEDNWNCQLE+ITYTAKDGKVSQLEHVFIRGSKVRFMVIPD+LK+APMFKRLDA+IK +++ G
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRG
Query: GATGRGAV
GRGA+
Subjt: GATGRGAV
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| AT1G76300.1 snRNP core protein SMD3 | 1.8e-46 | 72.66 | Show/hide |
Query: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAK---------
MSRSLGIPVKLLHE++GH+VSVE+KSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS VRF+VIPDMLKNAPMFK + K
Subjt: MSRSLGIPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAK---------
Query: ------IKAQAAGRGGATGRGAVPSARR
++A+ GRG GRGAVP RR
Subjt: ------IKAQAAGRGGATGRGAVPSARR
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| AT3G07590.1 Small nuclear ribonucleoprotein family protein | 4.8e-07 | 26.53 | Show/hide |
Query: VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRG
V+ L + VS+ELK+G + G++ + + N L+ + + K L+H+ +RG+ +R+ ++PD L + ++K + G A GRG
Subjt: VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGRGGATGRG
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| AT4G02840.1 Small nuclear ribonucleoprotein family protein | 2.8e-07 | 28.57 | Show/hide |
Query: VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQ-------AAGRGG
V+ L + VS+ELK+G + G++ + + N L+ + T K L+H+ +RG+ +R+ ++PD L + +IK + AGRG
Subjt: VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQ-------AAGRGG
Query: ATGRG
GRG
Subjt: ATGRG
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| AT5G27720.1 Small nuclear ribonucleoprotein family protein | 1.2e-10 | 32.11 | Show/hide |
Query: IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGR------
+P+ LL A GH + VELK+GE Y G ++ C+ N L + T+KDG + ++ +IRG+ ++++ +PD + + ++ K GR
Subjt: IPVKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFIRGSKVRFMVIPDMLKNAPMFKRLDAKIKAQAAGR------
Query: --GGATGRG
GGA GRG
Subjt: --GGATGRG
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