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CmoCh01G020890 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh01G020890
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionLate embryogenesis abundant protein, group 6
Genome locationCmo_Chr01:14516602..14516886
RNA-Seq ExpressionCmoCh01G020890
SyntenyCmoCh01G020890
Gene Ontology termsNA
InterPro domainsIPR018930 - Late embryogenesis abundant protein, LEA-18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064662.1 late embryogenesis abundant protein group 8 protein [Cucumis melo var. makuwa]1.9e-2773.56Show/hide
Query:  EPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH
        E   Q    G  EEK  VE+LLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSG+PEV P +ID VT+QGLIH
Subjt:  EPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH

KAE8649966.1 hypothetical protein Csa_012992 [Cucumis sativus]1.0e-2571.11Show/hide
Query:  MEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI
        M   E   Q    G  EEK  VE+LLPLESSPYVKYKDLE+YK KGYGVEGH+ PKP QGGGTDAPTLSGSG PEV P +ID VT+QGLI
Subjt:  MEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI

KAG6608652.1 hypothetical protein SDJN03_01994, partial [Cucurbita argyrosperma subsp. sororia]7.7e-4598.94Show/hide
Query:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH
        MWKMEEHEPPQQQMRR TEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH
Subjt:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH

XP_022937316.1 uncharacterized protein LOC111443639 [Cucurbita moschata]1.1e-2774.19Show/hide
Query:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI
        M   EE +  QQQ+ R  +EEK SVEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSGFPEV PA+ID VT  GL+
Subjt:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI

XP_023535424.1 uncharacterized protein LOC111796868 [Cucurbita pepo subsp. pepo]8.6e-2874.19Show/hide
Query:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI
        M   EE +  QQQ+ R  +EEK SVEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSGFPEV PA+ID VT  GL+
Subjt:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI

TrEMBL top hitse value%identityAlignment
A0A0A0L5Y6 Uncharacterized protein8.6e-2681.08Show/hide
Query:  EEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI
        EEK  VE+LLPLESSPYVKYKDLE+YK KGYGVEGH+ PKP QGGGTDAPTLSGSG PEV P +ID VT+QGLI
Subjt:  EEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI

A0A438ET15 Uncharacterized protein2.4e-1554.02Show/hide
Query:  QQMRRGTEEEKGSVEEL-----LPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ-GGGTDAPTLSGSGFPEVAPASIDAVTRQGL
        +Q+R+ TEEE+ + E+      LP+ESSPY+KY DLEDYK +GYG EGH+EPKP Q GGGTDAPTL+G+   +   + +DA  R G+
Subjt:  QQMRRGTEEEKGSVEEL-----LPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ-GGGTDAPTLSGSGFPEVAPASIDAVTRQGL

A0A5A7V8I8 Late embryogenesis abundant protein group 8 protein9.2e-2873.56Show/hide
Query:  EPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH
        E   Q    G  EEK  VE+LLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSG+PEV P +ID VT+QGLIH
Subjt:  EPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH

A0A6J1C2A9 uncharacterized protein LOC1110076213.3e-2568Show/hide
Query:  MWKMEEHEPPQQQMRRGT----EEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ---GGGTDAPTLSGSGFPEVAPASIDAVTRQGLI
        M K EE    Q Q +  T    EEEK SVEELLPLESSPYVKYKDLE+YK +GYG EGH+EPKP Q   GGGTDAPTLSG+GFPEV P++ID  T QGLI
Subjt:  MWKMEEHEPPQQQMRRGT----EEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQ---GGGTDAPTLSGSGFPEVAPASIDAVTRQGLI

A0A6J1FA12 uncharacterized protein LOC1114436395.4e-2874.19Show/hide
Query:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI
        M   EE +  QQQ+ R  +EEK SVEELLPLESSPYVKYKDLE+YK KGYG EGH+EPKP QGGGTDAPTLSGSGFPEV PA+ID VT  GL+
Subjt:  MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G23110.1 Late embryogenesis abundant protein, group 61.5e-0941.05Show/hide
Query:  MEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLS-----GSGFPEVAPASIDAVTRQGL
        ME+ + P    +   E +   +E +     +PY+ Y +LEDYK KGYG +GH EPK   GGG TDAPT S     G G      +S DA+ RQG+
Subjt:  MEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLS-----GSGFPEVAPASIDAVTRQGL

AT2G23110.2 Late embryogenesis abundant protein, group 61.5e-0941.05Show/hide
Query:  MEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLS-----GSGFPEVAPASIDAVTRQGL
        ME+ + P    +   E +   +E +     +PY+ Y +LEDYK KGYG +GH EPK   GGG TDAPT S     G G      +S DA+ RQG+
Subjt:  MEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLS-----GSGFPEVAPASIDAVTRQGL

AT2G23120.1 Late embryogenesis abundant protein, group 68.9e-0750.88Show/hide
Query:  TEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKP-IQGGGTDAPTLSG
        TE++   V++      SPY+    LEDYK K YG EGH EP P + GG TDAPT SG
Subjt:  TEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKP-IQGGGTDAPTLSG

AT2G33690.1 Late embryogenesis abundant protein, group 61.4e-1250Show/hide
Query:  KGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLSGSGFPEVAPASIDAVTRQ
        K   ++ LPLE+SPY KY+D+EDYK   YG  GH + KP  GGG TDAPT SG    + AP++ID+  ++
Subjt:  KGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGG-TDAPTLSGSGFPEVAPASIDAVTRQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGAAGATGGAAGAGCACGAGCCGCCGCAGCAGCAAATGAGGCGGGGAACAGAAGAAGAGAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGT
GAAATACAAGGACTTGGAAGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCA
GCGGCTTCCCAGAGGTGGCTCCAGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTGGAAGATGGAAGAGCACGAGCCGCCGCAGCAGCAAATGAGGCGGGGAACAGAAGAAGAGAAGGGTTCGGTGGAAGAACTGCTGCCACTGGAGAGCAGTCCTTACGT
GAAATACAAGGACTTGGAAGACTACAAAAACAAGGGGTATGGGGTGGAGGGCCATATTGAGCCCAAGCCCATTCAGGGCGGCGGCACCGATGCCCCCACCTTGTCCGGCA
GCGGCTTCCCAGAGGTGGCTCCAGCCTCCATTGACGCCGTCACCAGACAAGGCCTTATCCACTGA
Protein sequenceShow/hide protein sequence
MWKMEEHEPPQQQMRRGTEEEKGSVEELLPLESSPYVKYKDLEDYKNKGYGVEGHIEPKPIQGGGTDAPTLSGSGFPEVAPASIDAVTRQGLIH