| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_004150106.1 small nuclear ribonucleoprotein SmD1b [Cucumis sativus] | 4.5e-50 | 96.43 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSVRGN+IRYYILPDSLNLETLLVEET RVKPKKPTAG+PLGRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| XP_010929010.2 small nuclear ribonucleoprotein SmD1a isoform X1 [Elaeis guineensis] | 4.5e-50 | 83.94 | Show/hide |
Query: LSHSLRSSSSLDLSHLKTLLAWTSLLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLE
LS +L S S LSH L LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNP+T+DHLSVRGN+IRYYILPDSLNLE
Subjt: LSHSLRSSSSLDLSHLKTLLAWTSLLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLE
Query: TLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
TLLVEET RVKPKKPTAG+PLGRGRGRGRGRGRGRGR
Subjt: TLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRGR
|
|
| XP_022931093.1 small nuclear ribonucleoprotein SmD1b [Cucurbita moschata] | 2.0e-50 | 97.32 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSVRGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKPLGRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| XP_022947377.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] | 1.4e-51 | 100 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| XP_022963993.1 small nuclear ribonucleoprotein SmD1b-like [Cucurbita moschata] | 3.5e-50 | 96.43 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSVRGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKP+GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A6J1EXE6 Small nuclear ribonucleoprotein Sm D1 | 9.9e-51 | 97.32 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSVRGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKPLGRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| A0A6J1G6A2 Small nuclear ribonucleoprotein Sm D1 | 6.8e-52 | 100 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| A0A6J1HJI3 Small nuclear ribonucleoprotein Sm D1 | 1.7e-50 | 96.43 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSVRGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKP+GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| A0A6J1I3K7 Small nuclear ribonucleoprotein Sm D1 | 6.8e-52 | 100 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| A0A6J1K070 Small nuclear ribonucleoprotein Sm D1 | 9.9e-51 | 97.32 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNP+TMDHLSVRGN+IRYYILPDSLNLETLLVEET RVKPKKPTAGKPLGRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| SwissProt top hits | e value | %identity | Alignment |
|---|
| P62314 Small nuclear ribonucleoprotein Sm D1 | 3.9e-36 | 72.32 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + P+ ++ LS+RGN+IRY+ILPDSL L+TLLV+ +VK KK A GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| Q3ZC10 Small nuclear ribonucleoprotein Sm D1 | 3.9e-36 | 72.32 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + P+ ++ LS+RGN+IRY+ILPDSL L+TLLV+ +VK KK A GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| Q4R5F6 Small nuclear ribonucleoprotein Sm D1 | 3.9e-36 | 72.32 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + P+ ++ LS+RGN+IRY+ILPDSL L+TLLV+ +VK KK A GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| Q9SSF1 Small nuclear ribonucleoprotein SmD1a | 4.0e-49 | 88.39 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNP+T+DHLS+RGN+IRYYILPDSLNLETLLVE+T RVKPKKP AGK +GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| Q9SY09 Small nuclear ribonucleoprotein SmD1b | 8.0e-50 | 91.07 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGK-PLGRG
LVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNP+T+DHLSVRGN+IRYYILPDSLNLETLLVE+T R+KPKKPTAGK P GRG
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGK-PLGRG
Query: RGRGRGRGRGRG
RGRGRGRGRGRG
Subjt: RGRGRGRGRGRG
|
|
| Arabidopsis top hits | e value | %identity | Alignment |
|---|
| AT3G07590.1 Small nuclear ribonucleoprotein family protein | 2.8e-50 | 88.39 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNP+T+DHLS+RGN+IRYYILPDSLNLETLLVE+T RVKPKKP AGK +GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| AT3G07590.2 Small nuclear ribonucleoprotein family protein | 2.8e-50 | 88.39 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
LVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNP+T+DHLS+RGN+IRYYILPDSLNLETLLVE+T RVKPKKP AGK +GRGR
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGR
Query: GRGRGRGRGRGR
GRGRGRGRGRGR
Subjt: GRGRGRGRGRGR
|
|
| AT4G02840.1 Small nuclear ribonucleoprotein family protein | 5.7e-51 | 91.07 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGK-PLGRG
LVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNP+T+DHLSVRGN+IRYYILPDSLNLETLLVE+T R+KPKKPTAGK P GRG
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGK-PLGRG
Query: RGRGRGRGRGRG
RGRGRGRGRGRG
Subjt: RGRGRGRGRGRG
|
|
| AT4G02840.2 Small nuclear ribonucleoprotein family protein | 1.6e-48 | 83.61 | Show/hide |
Query: LVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKP
LVRFLMKLNNETVSIELKNGT+VHGTIT GVD+SMNTHLKAVKLTLKGKNP+T+DHLSVRGN+IRYYILPDSLNLETLLVE+T R+KPKKP
Subjt: LVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKP
Query: TAGK-PLGRGRGRGRGRGRGRG
TAGK P GRGRGRGRGRGRGRG
Subjt: TAGK-PLGRGRGRGRGRGRGRG
|
|
| AT5G27720.1 Small nuclear ribonucleoprotein family protein | 1.3e-07 | 40.82 | Show/hide |
Query: IELKNGTVVHGTITGVDISMNTHLKAVKLTLK-GKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRG
+ELKNG +G + D MN HL+ V T K G M +RGN+I+Y +PD + + EE TR K P G+ GRG G RGRGRG
Subjt: IELKNGTVVHGTITGVDISMNTHLKAVKLTLK-GKNPITMDHLSVRGNSIRYYILPDSLNLETLLVEETTRVKPKKPTAGKPLGRGRGRGRGRGRGRG
|
|
