; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G000610 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G000610
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionE3 ubiquitin-protein ligase COP1
Genome locationCmo_Chr02:320795..324045
RNA-Seq ExpressionCmoCh02G000610
SyntenyCmoCh02G000610
Gene Ontology termsGO:0009640 - photomorphogenesis (biological process)
GO:0009641 - shade avoidance (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0010119 - regulation of stomatal movement (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0006281 - DNA repair (biological process)
GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0046283 - anthocyanin-containing compound metabolic process (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0016604 - nuclear body (cellular component)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0032440 - 2-alkenal reductase [NAD(P)] activity (molecular function)
InterPro domainsIPR042755 - E3 ubiquitin-protein ligase COP1
IPR036322 - WD40-repeat-containing domain superfamily
IPR015943 - WD40/YVTN repeat-like-containing domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054476.1 E3 ubiquitin-protein ligase COP1 [Cucumis melo var. makuwa]8.9e-1582.46Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY
        MKL  AGDDMKA EPW +LMDKRNDGPT TSLNT GVVS+GN Q KKADSRSQVSTY
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY

KAA0054476.1 E3 ubiquitin-protein ligase COP1 [Cucumis melo var. makuwa]1.1e-2575.31Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAVCW+SDSPTIL+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

KAG6604751.1 E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. sororia]1.0e-66100Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDA
        MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDA
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDA

Query:  GSNFISAVCWESDSPTILSANSQGTIKVIQA
        GSNFISAVCWESDSPTILSANSQGTIKVIQA
Subjt:  GSNFISAVCWESDSPTILSANSQGTIKVIQA

KAG7034880.1 E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.9e-6599.22Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDA
        MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDA
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDA

Query:  GSNFISAVCWESDSPTILSANSQGTIKVI
        GSNFISAVCWESDSPTILSANSQGTIKV+
Subjt:  GSNFISAVCWESDSPTILSANSQGTIKVI

XP_008456402.1 PREDICTED: E3 ubiquitin-protein ligase COP1 [Cucumis melo]8.9e-1582.46Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY
        MKL  AGDDMKA EPW +LMDKRNDGPT TSLNT GVVS+GN Q KKADSRSQVSTY
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY

XP_022149595.1 E3 ubiquitin-protein ligase COP1 [Momordica charantia]2.2e-2676.54Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VNS+YI+CGSETNEVFVYHKEISR LT H+FGSPDAGDVED+ GS FISAVCW+SDSPTIL+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

XP_022149595.1 E3 ubiquitin-protein ligase COP1 [Momordica charantia]1.7e-1377.19Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY
        MK+ MAGDDM A +PWSSL DKR+DGPT TSLNT GVVS+GN Q KKADSRSQVS+Y
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY

XP_022149595.1 E3 ubiquitin-protein ligase COP1 [Momordica charantia]1.1e-2575.31Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAVCW+SDSPTIL+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

TrEMBL top hitse value%identityAlignment
A0A1S3C4F2 E3 ubiquitin-protein ligase COP14.3e-1582.46Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY
        MKL  AGDDMKA EPW +LMDKRNDGPT TSLNT GVVS+GN Q KKADSRSQVSTY
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY

A0A1S3C4F2 E3 ubiquitin-protein ligase COP19.2e-2674.39Show/hide
Query:  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        A+ ++ V   V+S+YIACGSETNEVFVYHKEISR LTSH+FGSPD  D ED+AGS FISAVCW+SD PTIL+ANSQGTIKV+
Subjt:  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

A0A5A7UJL9 E3 ubiquitin-protein ligase COP14.3e-1582.46Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY
        MKL  AGDDMKA EPW +LMDKRNDGPT TSLNT GVVS+GN Q KKADSRSQVSTY
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY

A0A5A7UJL9 E3 ubiquitin-protein ligase COP15.4e-2675.31Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAVCW+SDSPTIL+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

A0A5D3CT10 E3 ubiquitin-protein ligase COP14.3e-1582.46Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY
        MKL  AGDDMKA EPW +LMDKRNDGPT TSLNT GVVS+GN Q KKADSRSQVSTY
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY

A0A5D3CT10 E3 ubiquitin-protein ligase COP15.4e-2675.31Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAVCW+SDSPTIL+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

A0A6J1D659 E3 ubiquitin-protein ligase COP11.1e-2676.54Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VNS+YI+CGSETNEVFVYHKEISR LT H+FGSPDAGDVED+ GS FISAVCW+SDSPTIL+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

A0A6J1D659 E3 ubiquitin-protein ligase COP18.1e-1477.19Show/hide
Query:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY
        MK+ MAGDDM A +PWSSL DKR+DGPT TSLNT GVVS+GN Q KKADSRSQVS+Y
Subjt:  MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTY

A0A6J1D659 E3 ubiquitin-protein ligase COP15.4e-2675.31Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VN++YIACGSETNEVFVYHKEISR LT H+FGSPD  DVEDD GS FISAVCW+SDSPTIL+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

SwissProt top hitse value%identityAlignment
P43254 E3 ubiquitin-protein ligase COP16.1e-2769.14Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VNS+Y+ACGSETNEV+VYHKEI+R +TSH+FGSPD  D E++AGS FISAVCW+SDSPT+L+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

P93471 E3 ubiquitin-protein ligase COP12.0e-2569.51Show/hide
Query:  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        A+ ++ V   V S+YIACGSETNEVFVYHKEIS+ LT H+FG+ D  D ED+AGS FISAVCW+SD PTIL+ANSQGTIKV+
Subjt:  ADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

Q94BM7 Protein SPA1-RELATED 43.3e-1247.44Show/hide
Query:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ
        V   V+  YIA GSETNEVFVYHK     + S++F + D   ++E D  S FIS+VCW   S T+++ANS G IK+++
Subjt:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ

Q9LJR3 Protein SPA1-RELATED 32.5e-1246.15Show/hide
Query:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDA-GDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ
        V   V+  YIA GSETNEVFVYHK     + S+ F + D+   +E D  S FIS++CW   S T+++ANS G IK+++
Subjt:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDA-GDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ

Q9T014 Protein SPA1-RELATED 23.3e-1241.67Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGS--PDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ
        + ++ V    +  YIACGSETNEV+ YH+ +   +TS++FGS  P +G   ++  + F+S+VCW   S  ++SA+S G+IKV+Q
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGS--PDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ

Arabidopsis top hitse value%identityAlignment
AT1G53090.1 SPA1-related 42.3e-1347.44Show/hide
Query:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ
        V   V+  YIA GSETNEVFVYHK     + S++F + D   ++E D  S FIS+VCW   S T+++ANS G IK+++
Subjt:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ

AT1G53090.2 SPA1-related 42.3e-1347.44Show/hide
Query:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ
        V   V+  YIA GSETNEVFVYHK     + S++F + D   ++E D  S FIS+VCW   S T+++ANS G IK+++
Subjt:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPD-AGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ

AT2G32950.1 Transducin/WD40 repeat-like superfamily protein4.4e-2869.14Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI
        + ++ V   VNS+Y+ACGSETNEV+VYHKEI+R +TSH+FGSPD  D E++AGS FISAVCW+SDSPT+L+ANSQGTIKV+
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVI

AT3G15354.1 SPA1-related 31.8e-1346.15Show/hide
Query:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDA-GDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ
        V   V+  YIA GSETNEVFVYHK     + S+ F + D+   +E D  S FIS++CW   S T+++ANS G IK+++
Subjt:  VSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDA-GDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ

AT4G11110.1 SPA1-related 22.3e-1341.67Show/hide
Query:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGS--PDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ
        + ++ V    +  YIACGSETNEV+ YH+ +   +TS++FGS  P +G   ++  + F+S+VCW   S  ++SA+S G+IKV+Q
Subjt:  DSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGS--PDAGDVEDDAGSNFISAVCWESDSPTILSANSQGTIKVIQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCTATGGATGGCTGGAGATGATATGAAAGCTATAGAACCTTGGTCATCATTAATGGATAAGAGAAATGATGGGCCTACCTTTACATCTCTGAACACCGGGGGTGT
TGTGTCCTCTGGGAATTCTCAAATTAAGAAAGCAGATTCAAGGAGTCAAGTCAGCACTTATGTAAATAGCCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTCG
TCTACCACAAGGAAATCTCCAGACAGCTGACTTCGCATCAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGG
GAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTTATACAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCTATGGATGGCTGGAGATGATATGAAAGCTATAGAACCTTGGTCATCATTAATGGATAAGAGAAATGATGGGCCTACCTTTACATCTCTGAACACCGGGGGTGT
TGTGTCCTCTGGGAATTCTCAAATTAAGAAAGCAGATTCAAGGAGTCAAGTCAGCACTTATGTAAATAGCCAATACATTGCTTGCGGCAGTGAAACAAACGAAGTCTTCG
TCTACCACAAGGAAATCTCCAGACAGCTGACTTCGCATCAATTTGGTTCACCTGATGCAGGTGATGTGGAGGATGATGCGGGATCTAATTTCATCAGTGCTGTTTGCTGG
GAGAGTGATAGTCCTACTATCCTCAGTGCCAACAGCCAGGGAACAATTAAGGTTATACAAGCTTAACTTATGAATCGAATATCATTTGTTATCTCGTGAAATCAGCATTG
TGGGCTTGGATAACTACATGTGTTCATATTACCTGAACAACTCGGACTATTCAATAACCATTATAAGAGGTACGGATTACATCCCTCTACGATTCATCCCCTCCCTATGC
TGCCAAAAAGAAAAGAATATAATAATGAATTAATGAGCAATGGAAAGGAATAGAGGAAGAAAACAGAAAAGCTTTCTTTATTGCCTGTGAAGATTGTCAATAAAAATAAA
AAATGGGAATAGGTATATGTACTTGGCACAAGCGTAGGGGACGGGGTGCTTGGTAAAACAAGATTCCCCATAAAGAAATAGAGAAACCGAGAGTTCCTCAAATGGTCAAA
ATTCAAACCTCTTCCTTCCCTTATTATGAGAGCCCGTAATAAACTTTCAACGACATTCAACCAATATGGAAGCTCATCATATGATTTCGCATCCACGTGTTTGTGTCATC
TTTAGTGGCAAACGGTAACTATATTGGGCACAATTTATTTAGTTATTCTTACACATAGTACATGAGTTACATTAATTATGGTATACGGTTACACTATTTTTCTCAATGCT
TTTTGACATTACCC
Protein sequenceShow/hide protein sequence
MKLWMAGDDMKAIEPWSSLMDKRNDGPTFTSLNTGGVVSSGNSQIKKADSRSQVSTYVNSQYIACGSETNEVFVYHKEISRQLTSHQFGSPDAGDVEDDAGSNFISAVCW
ESDSPTILSANSQGTIKVIQA