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CmoCh02G000620 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G000620
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionE3 ubiquitin-protein ligase COP1
Genome locationCmo_Chr02:324098..325605
RNA-Seq ExpressionCmoCh02G000620
SyntenyCmoCh02G000620
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0009640 - photomorphogenesis (biological process)
GO:0009641 - shade avoidance (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0010119 - regulation of stomatal movement (biological process)
GO:0016567 - protein ubiquitination (biological process)
GO:0043161 - proteasome-mediated ubiquitin-dependent protein catabolic process (biological process)
GO:0046283 - anthocyanin-containing compound metabolic process (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0016604 - nuclear body (cellular component)
GO:0032440 - 2-alkenal reductase [NAD(P)] activity (molecular function)
GO:0042802 - identical protein binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsIPR042755 - E3 ubiquitin-protein ligase COP1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0054476.1 E3 ubiquitin-protein ligase COP1 [Cucumis melo var. makuwa]2.7e-2087.1Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+VSIKELDSLLAMLSEKKRKMEQEES RNMKILTDFL+C RKQK++ELNEVQTDLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
KAG6604752.1 E3 ubiquitin-protein ligase COP1, partial [Cucurbita argyrosperma subsp. sororia]5.1e-27100Show/hide
Query:  MGCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKDGTV
        MGCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKDGTV
Subjt:  MGCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKDGTV
XP_008456402.1 PREDICTED: E3 ubiquitin-protein ligase COP1 [Cucumis melo]2.7e-2087.1Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+VSIKELDSLLAMLSEKKRKMEQEES RNMKILTDFL+C RKQK++ELNEVQTDLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
XP_022149595.1 E3 ubiquitin-protein ligase COP1 [Momordica charantia]1.4e-2190.32Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFL+C RKQK+NELNEVQTDL+F+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
XP_038901633.1 E3 ubiquitin-protein ligase COP1 isoform X1 [Benincasa hispida]9.3e-2187.1Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+VSIKELDSLLAMLSEKKRKMEQEES+RNMKILTDFL+C RKQK++ELNEVQTDLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
TrEMBL top hitse value%identityAlignment
A0A0A0KBG5 Uncharacterized protein6.5e-2085.48Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+VSIKELDSLLAMLSEKKRKMEQEES RNMKILTDFL+C RKQK++ELNEVQ DLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
A0A1S3C4F2 E3 ubiquitin-protein ligase COP11.3e-2087.1Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+VSIKELDSLLAMLSEKKRKMEQEES RNMKILTDFL+C RKQK++ELNEVQTDLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
A0A5A7UJL9 E3 ubiquitin-protein ligase COP11.3e-2087.1Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+VSIKELDSLLAMLSEKKRKMEQEES RNMKILTDFL+C RKQK++ELNEVQTDLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
A0A5D3CT10 E3 ubiquitin-protein ligase COP11.3e-2087.1Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+VSIKELDSLLAMLSEKKRKMEQEES RNMKILTDFL+C RKQK++ELNEVQTDLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
A0A6J1D659 E3 ubiquitin-protein ligase COP16.9e-2290.32Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFL+C RKQK+NELNEVQTDL+F+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
SwissProt top hitse value%identityAlignment
P43254 E3 ubiquitin-protein ligase COP11.6e-2074.19Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GCDVSIKE+D+LL +L+E+KRKMEQEE+ERNM+IL DFL+C RKQK++ELNEVQTDLQ++K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
P93471 E3 ubiquitin-protein ligase COP11.4e-1972.58Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GC+V++KELD+LL +L+EKKRKMEQEE+ERNM+IL DFL+C RKQK++EL EVQTDLQF+K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
Arabidopsis top hitse value%identityAlignment
AT2G32950.1 Transducin/WD40 repeat-like superfamily protein1.2e-2174.19Show/hide
Query:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD
        GCDVSIKE+D+LL +L+E+KRKMEQEE+ERNM+IL DFL+C RKQK++ELNEVQTDLQ++K+
Subjt:  GCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKD

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCTGTGATGTGTCAATTAAGGAGCTGGACTCCCTCTTGGCAATGCTTTCTGAGAAGAAGAGAAAGATGGAACAAGAAGAATCTGAGAGAAATATGAAAATCTTAAC
TGACTTCTTATATTGCCCAAGGAAGCAAAAAATTAACGAGCTCAATGAGGTGCAAACTGATCTTCAGTTTGTTAAGGATGGAACTGTATAG
mRNA sequenceShow/hide mRNA sequence
CTACTTCGCTCTCCCTCCGGCTGCTCGGTCCTCAAAAAGGTCGATGGGCGAGGGATCAACCGGAGCCTTAGTCCCGGCGGTGAAGTCGGAGCCAGCTGCATCGTCAATTC
CCGATTGGCTCTCTCACCGAGGCTCCGACTCAGCTGGATAAGGACTTCCTCTGCCCGATTTGCATTCAGATCATTAGCGATGTGATCCTCACTGCTTGTGGCCATAGCTT
CTGCTATATGTGCATCATTTCATCTCCATAACAAGAGCGATTGCCCTTGCTGCTCTCGGCATGTCACCTCCGACCAGCTGTTTCCTAACTTCTCGCTTGATATGGGCTGT
GATGTGTCAATTAAGGAGCTGGACTCCCTCTTGGCAATGCTTTCTGAGAAGAAGAGAAAGATGGAACAAGAAGAATCTGAGAGAAATATGAAAATCTTAACTGACTTCTT
ATATTGCCCAAGGAAGCAAAAAATTAACGAGCTCAATGAGGTGCAAACTGATCTTCAGTTTGTTAAGGATGGAACTGTATAG
Protein sequenceShow/hide protein sequence
MGCDVSIKELDSLLAMLSEKKRKMEQEESERNMKILTDFLYCPRKQKINELNEVQTDLQFVKDGTV