; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G000960 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G000960
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor bHLH162-like
Genome locationCmo_Chr02:514901..516070
RNA-Seq ExpressionCmoCh02G000960
SyntenyCmoCh02G000960
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:2000112 - regulation of cellular macromolecule biosynthetic process (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR015660 - Achaete-scute transcription factor-related
IPR036638 - Helix-loop-helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604789.1 Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia]1.0e-8079.28Show/hide
Query:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS
        MESNREAGNQQNQQ+VNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPN+STDSPLTVSDQIEEAIKYIKSLEMKLQKC EKKERILARLNMSSALSD AS
Subjt:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS

Query:  TNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGAS
        TNNNSPELRIKEMGSIVEVVFTRGFED+ LFDELIGVFHEERAEIINLNYS                                      SDAEM+AGGAS
Subjt:  TNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGAS

Query:  SSGHGGTHPPANIPTMSSGRHF
        SSGHGGTHPPANIPTMSSG HF
Subjt:  SSGHGGTHPPANIPTMSSGRHF

XP_022948054.1 transcription factor bHLH162-like [Cucurbita moschata]7.7e-7380.71Show/hide
Query:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF
        MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF
Subjt:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF

Query:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
        EDRSLFDELIGVFHEERAEIINLNYS                                      SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
Subjt:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF

XP_022970723.1 transcription factor bHLH162-like [Cucurbita maxima]7.4e-6876.65Show/hide
Query:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF
        MEKNRRNQMKLLYSNLNSLLPPN+STDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILA LNMSSA SDRASTNNNSPELRIKEMGSIVEVVF RGF
Subjt:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF

Query:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
        ED+SLFDELIGVFHEERAEIINLNYS                                      SDAE+LAGGASSSGHGGTHPPA IPTMSS RHF
Subjt:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF

XP_023532358.1 transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]1.3e-4354.95Show/hide
Query:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS
        ME  REA    NQQN +TNKVERKV+EKNRRNQMKLLYSNLNSLLPPNQSTDSPLT+ DQIEEAIKYI+SL +KL K KEKK+RIL         +   S
Subjt:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS

Query:  TNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGAS
         ++N PEL+IKEMGS VEVVFT    DR LF E+I +FHEER EIIN  YS                                      SDAE  A GAS
Subjt:  TNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGAS

Query:  SSGHGGTHPPANIPTMSSGRHF
        SSG+GG+HP  + PT   G  F
Subjt:  SSGHGGTHPPANIPTMSSGRHF

XP_023533210.1 transcription factor bHLH162-like [Cucurbita pepo subsp. pepo]2.4e-6677.78Show/hide
Query:  MKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDE
        MKLLYSNLNSLLPPN+STDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSD ASTNNNSPELRIKEMGSIVEVVFTRGFED+SLF+E
Subjt:  MKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDE

Query:  LIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
        LIGVFHEERAEIINLNYS                                      SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
Subjt:  LIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF

TrEMBL top hitse value%identityAlignment
A0A6J1FXP8 transcription factor bHLH162-like1.9e-2947.89Show/hide
Query:  MKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF-EDRSLFD
        MK LYS LNSLLP + S + PL+V DQIEEAIKYIKSLE+KL+K +EKKER   R + SS ++   S N N PELRIKEMGS VEVV + G  EDR +F 
Subjt:  MKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF-EDRSLFD

Query:  ELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
        E+I +F+EERAEI+N++YS                                      +DAEM A G+SSS HGG   P N P+  S   F
Subjt:  ELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF

A0A6J1G8B1 transcription factor bHLH162-like3.1e-4355.86Show/hide
Query:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS
        ME  REA    NQQN +TNKVERKV+EKNRRNQMKLLYS LNSLLPPNQSTDSPLTV DQIEEAIKYI+SL +KL K KEKK+RIL    MS   +   S
Subjt:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS

Query:  TNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGAS
         ++N PEL+IKEMGS VEVVF     DR LF E+I +FHEERAEIIN  YS                                      SDAE  A GAS
Subjt:  TNNNSPELRIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGAS

Query:  SSGHGGTHPPANIPTMSSGRHF
        SSG+GG+HP  + PT   G  F
Subjt:  SSGHGGTHPPANIPTMSSGRHF

A0A6J1G8Q1 transcription factor bHLH162-like3.7e-7380.71Show/hide
Query:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF
        MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF
Subjt:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF

Query:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
        EDRSLFDELIGVFHEERAEIINLNYS                                      SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
Subjt:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF

A0A6J1I4R7 transcription factor bHLH162-like3.6e-6876.65Show/hide
Query:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF
        MEKNRRNQMKLLYSNLNSLLPPN+STDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILA LNMSSA SDRASTNNNSPELRIKEMGSIVEVVF RGF
Subjt:  MEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF

Query:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
        ED+SLFDELIGVFHEERAEIINLNYS                                      SDAE+LAGGASSSGHGGTHPPA IPTMSS RHF
Subjt:  EDRSLFDELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF

A0A6J1JF05 transcription factor bHLH162-like2.0e-2645.26Show/hide
Query:  MKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF-EDRSLFD
        MK LYS LNSLLP + S + PL+VSDQIEEAIKYIKSLE+KL+K +EKKER   + + S   +   S N N PELRIKE+GS VEVV + G  EDR +F 
Subjt:  MKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRIKEMGSIVEVVFTRGF-EDRSLFD

Query:  ELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF
        E+I +F++ERAEI+N++YS                                      +D EM A G+SSS  GG+  P N P+  S   F
Subjt:  ELIGVFHEERAEIINLNYS--------------------------------------SDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF

SwissProt top hitse value%identityAlignment
F4JIJ7 Transcription factor bHLH1621.2e-1539.58Show/hide
Query:  TNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS---------PEL
        +  V+RK +EKNRR QMK LYS L SLLP + ST+ PLT+ DQ++EA  YIK L++ ++K +E+K  ++A   +    S  +S+ ++S         P++
Subjt:  TNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS---------PEL

Query:  RIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEE-RAEIINLNYS
         I+E GSI  +      E + +F E+I V  EE  AEI +  YS
Subjt:  RIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEE-RAEIINLNYS

Q9XIJ1 Transcription factor bHLH1683.5e-0428Show/hide
Query:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS
        ME  RE G    + + ++ + +R + EK RR +MK L+S L+S + P +     L V   I++A+ Y+  L+ K+    E K R+L        + +R+ 
Subjt:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS

Query:  TNNNSPELRIKEMGSIVEVVFTRGFEDRS-LFDELIGVFHEERAEIINLN
         ++  P+L I+ + SI+E+        +  +  +L+ VF EE A++++ N
Subjt:  TNNNSPELRIKEMGSIVEVVFTRGFEDRS-LFDELIGVFHEERAEIINLN

Arabidopsis top hitse value%identityAlignment
AT1G10586.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein2.5e-0528Show/hide
Query:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS
        ME  RE G    + + ++ + +R + EK RR +MK L+S L+S + P +     L V   I++A+ Y+  L+ K+    E K R+L        + +R+ 
Subjt:  MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRAS

Query:  TNNNSPELRIKEMGSIVEVVFTRGFEDRS-LFDELIGVFHEERAEIINLN
         ++  P+L I+ + SI+E+        +  +  +L+ VF EE A++++ N
Subjt:  TNNNSPELRIKEMGSIVEVVFTRGFEDRS-LFDELIGVFHEERAEIINLN

AT2G41240.1 basic helix-loop-helix protein 1004.7e-0429.14Show/hide
Query:  KVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS-PELRIKEMGSIVE
        K+     E+ RR ++  ++S+L S LPP   T   L+VS  + +A+KYI  L+ +++K  +KKE +  ++   S   D   T+ NS  E  +    S V 
Subjt:  KVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS-PELRIKEMGSIVE

Query:  VVFTRGFEDRSLFDELIGVFHEERAEIINL--NYSSDAEMLAGGASSSGHG
           TR  E   +    I     E+    N+      D  +L G +SS  HG
Subjt:  VVFTRGFEDRSLFDELIGVFHEERAEIINL--NYSSDAEMLAGGASSSGHG

AT2G41240.2 basic helix-loop-helix protein 1006.2e-0429.14Show/hide
Query:  KVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS-PELRIKEMGSIVE
        K+     E+ RR ++  ++S+L S LPP   T   L+VS  + +A+KYI  L+ +++K  +KKE +  ++   S   D   T+ NS  E  +    S V 
Subjt:  KVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS-PELRIKEMGSIVE

Query:  VVFTRGFEDRSLFDELIGVFHEERAEIINL--NYSSDAEMLAGGASSSGHG
           TR  E   +    I     E+    N+      D  +L G +SS  HG
Subjt:  VVFTRGFEDRSLFDELIGVFHEERAEIINL--NYSSDAEMLAGGASSSGHG

AT4G20970.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein8.3e-1739.58Show/hide
Query:  TNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS---------PEL
        +  V+RK +EKNRR QMK LYS L SLLP + ST+ PLT+ DQ++EA  YIK L++ ++K +E+K  ++A   +    S  +S+ ++S         P++
Subjt:  TNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNS---------PEL

Query:  RIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEE-RAEIINLNYS
         I+E GSI  +      E + +F E+I V  EE  AEI +  YS
Subjt:  RIKEMGSIVEVVFTRGFEDRSLFDELIGVFHEE-RAEIINLNYS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAGTAATCGCGAAGCTGGGAATCAACAAAATCAACAAAATGTTAATACCAACAAGGTTGAAAGAAAAGTTATGGAGAAAAATCGAAGAAACCAGATGAAATTGCT
GTATTCCAACCTCAATTCTCTCCTTCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTCGGATCAGATAGAGGAAGCCATTAAGTACATAAAATCACTTGAGATGA
AGCTGCAGAAGTGCAAGGAGAAGAAGGAGAGAATTCTGGCAAGGTTGAATATGTCGTCGGCGCTGTCGGACAGAGCGTCGACGAATAATAACTCGCCTGAATTGAGAATC
AAAGAGATGGGTTCGATTGTGGAGGTTGTTTTCACAAGAGGGTTTGAGGATCGGTCTTTGTTTGATGAGCTTATTGGCGTCTTTCATGAGGAGCGAGCGGAGATCATTAA
TCTTAATTATTCCAGTGATGCTGAAATGCTGGCTGGAGGAGCTTCTTCAAGCGGCCATGGGGGAACCCATCCGCCGGCGAACATTCCGACGATGAGTTCCGGTCGCCATT
TCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAGTAATCGCGAAGCTGGGAATCAACAAAATCAACAAAATGTTAATACCAACAAGGTTGAAAGAAAAGTTATGGAGAAAAATCGAAGAAACCAGATGAAATTGCT
GTATTCCAACCTCAATTCTCTCCTTCCACCCAATCAATCCACTGATTCGCCATTGACGGTGTCGGATCAGATAGAGGAAGCCATTAAGTACATAAAATCACTTGAGATGA
AGCTGCAGAAGTGCAAGGAGAAGAAGGAGAGAATTCTGGCAAGGTTGAATATGTCGTCGGCGCTGTCGGACAGAGCGTCGACGAATAATAACTCGCCTGAATTGAGAATC
AAAGAGATGGGTTCGATTGTGGAGGTTGTTTTCACAAGAGGGTTTGAGGATCGGTCTTTGTTTGATGAGCTTATTGGCGTCTTTCATGAGGAGCGAGCGGAGATCATTAA
TCTTAATTATTCCAGTGATGCTGAAATGCTGGCTGGAGGAGCTTCTTCAAGCGGCCATGGGGGAACCCATCCGCCGGCGAACATTCCGACGATGAGTTCCGGTCGCCATT
TCTAG
Protein sequenceShow/hide protein sequence
MESNREAGNQQNQQNVNTNKVERKVMEKNRRNQMKLLYSNLNSLLPPNQSTDSPLTVSDQIEEAIKYIKSLEMKLQKCKEKKERILARLNMSSALSDRASTNNNSPELRI
KEMGSIVEVVFTRGFEDRSLFDELIGVFHEERAEIINLNYSSDAEMLAGGASSSGHGGTHPPANIPTMSSGRHF