; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G001730 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G001730
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionhigh mobility group B protein 3-like
Genome locationCmo_Chr02:826546..828645
RNA-Seq ExpressionCmoCh02G001730
SyntenyCmoCh02G001730
Gene Ontology termsGO:0006333 - chromatin assembly or disassembly (biological process)
GO:0000785 - chromatin (cellular component)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003682 - chromatin binding (molecular function)
GO:0030527 - structural constituent of chromatin (molecular function)
InterPro domainsIPR009071 - High mobility group box domain
IPR031061 - High mobility group protein HMGB, plant
IPR036910 - High mobility group box domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604859.1 High mobility group B protein 3, partial [Cucurbita argyrosperma subsp. sororia]1.6e-85100Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKLVTVFFSLSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS
        AEYEIALEVYKKKLVTVFFSLSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS
Subjt:  AEYEIALEVYKKKLVTVFFSLSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS

KAG7034971.1 High mobility group B protein 1 [Cucurbita argyrosperma subsp. argyrosperma]1.7e-53100Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKLVT
        AEYEIALEVYKKKLVT
Subjt:  AEYEIALEVYKKKLVT

XP_022947100.1 high mobility group B protein 3-like [Cucurbita moschata]1.8e-52100Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKL
        AEYEIALEVYKKKL
Subjt:  AEYEIALEVYKKKL

XP_022971125.1 high mobility group B protein 3-like [Cucurbita maxima]1.8e-52100Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKL
        AEYEIALEVYKKKL
Subjt:  AEYEIALEVYKKKL

XP_023533147.1 high mobility group B protein 3-like [Cucurbita pepo subsp. pepo]5.3e-5299.12Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRALKNAVVTHKKPN EMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKL
        AEYEIALEVYKKKL
Subjt:  AEYEIALEVYKKKL

TrEMBL top hitse value%identityAlignment
A0A1S3C1W5 HMG1/2-like protein isoform X13.3e-3979.83Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDA--------EKAPY
        MRAL+NAVVTHKKPNA+ LK+RKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP VGKAGGEKWKSMSDA        EKAPY
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDA--------EKAPY

Query:  AEKSLGRKAEYEIALEVYK
        AEK+L RKAEYEIALE YK
Subjt:  AEKSLGRKAEYEIALEVYK

A0A1S3C2L9 high mobility group B protein 1-like isoform X22.1e-4185.59Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRAL+NAVVTHKKPNA+ LK+RKAEMKSTKS    KKDQNAPKRPATAFF+FMEEFR  FKE+FPDAKAGP VGKAGGEKWKSMSDAEKAPYAEK+L RK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYK
        AEYEIALE YK
Subjt:  AEYEIALEVYK

A0A6J1CIL2 high mobility group B protein 3-like1.8e-4587.72Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRA +NAV+  KKPNAEMLK+RKAEMKSTKSNK+MKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKS+SDAEKAPYAEK+L RK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKL
         EY IALE YKK L
Subjt:  AEYEIALEVYKKKL

A0A6J1G5W3 high mobility group B protein 3-like8.9e-53100Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKL
        AEYEIALEVYKKKL
Subjt:  AEYEIALEVYKKKL

A0A6J1I4V5 high mobility group B protein 3-like8.9e-53100Show/hide
Query:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
        MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK
Subjt:  MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRK

Query:  AEYEIALEVYKKKL
        AEYEIALEVYKKKL
Subjt:  AEYEIALEVYKKKL

SwissProt top hitse value%identityAlignment
O49595 High mobility group B protein 11.5e-2051.89Show/hide
Query:  VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALE
        V  +K         K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA  AVGKAGG+KWKSMS AEKAPY EK+  RKAEYE  ++
Subjt:  VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALE

Query:  VYKKKL
         Y K L
Subjt:  VYKKKL

O49596 High mobility group B protein 22.8e-1954.17Show/hide
Query:  LKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL
        L   K   K     KA  KD N PKRPA+AFF+FME+FR+TFK++ P  K+   VGKA G+KWKS+SD+EKAPY  K+  RK EYE  ++ Y KKL
Subjt:  LKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKKL

P26585 HMG1/2-like protein8.1e-1958.24Show/hide
Query:  KAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKK
        KA   + K   A  KD N PKRP +AFF+FMEEFRK F ++ P+ KA  AVGKA G KWK+MSDAEKAPY  KS  RK EYE  +  Y KK
Subjt:  KAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYKKK

P40619 HMG1/2-like protein1.2e-1954.9Show/hide
Query:  KKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK
        K  N   +KK+ A+ K TK  KA+ KD N PKRP +AFF+FME+FRKT+KEK P+ K+   VGKAGG+KWK ++ AEKAP+  K+  RK EYE  L+ Y 
Subjt:  KKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK

Query:  KK
        KK
Subjt:  KK

P93047 High mobility group B protein 38.6e-2155.34Show/hide
Query:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK
        K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y 
Subjt:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK

Query:  KKL
        KKL
Subjt:  KKL

Arabidopsis top hitse value%identityAlignment
AT1G20696.1 high mobility group B36.1e-2255.34Show/hide
Query:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK
        K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y 
Subjt:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK

Query:  KKL
        KKL
Subjt:  KKL

AT1G20696.2 high mobility group B32.1e-2255.77Show/hide
Query:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK
        K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y 
Subjt:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK

Query:  KKLV
        KKLV
Subjt:  KKLV

AT1G20696.3 high mobility group B36.1e-2255.34Show/hide
Query:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK
        K KAE +STK +         K   KD N PKRP++AFF+FME+FR T+KE+ P  K+  AVGKAGGEKWKS+SD+EKAPY  K+  RK EYE  ++ Y 
Subjt:  KRKAEMKSTKSN---------KAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVYK

Query:  KKL
        KKL
Subjt:  KKL

AT3G51880.1 high mobility group B11.0e-2151.89Show/hide
Query:  VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALE
        V  +K         K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA  AVGKAGG+KWKSMS AEKAPY EK+  RKAEYE  ++
Subjt:  VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALE

Query:  VYKKKL
         Y K L
Subjt:  VYKKKL

AT3G51880.2 high mobility group B11.0e-2151.89Show/hide
Query:  VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALE
        V  +K         K   + T+  K  KKD N PKR  +AFF+F+E+FR TFK++ P+ KA  AVGKAGG+KWKSMS AEKAPY EK+  RKAEYE  ++
Subjt:  VTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALE

Query:  VYKKKL
         Y K L
Subjt:  VYKKKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGCTCTGAAGAACGCTGTCGTCACTCACAAGAAGCCTAACGCAGAGATGCTGAAAAAGAGGAAAGCTGAGATGAAATCCACGAAAAGCAACAAAGCCATGAAGAA
AGACCAGAATGCTCCTAAACGTCCAGCCACAGCGTTCTTCATTTTCATGGAGGAATTTAGAAAGACGTTCAAGGAGAAGTTTCCTGATGCAAAAGCTGGTCCAGCTGTTG
GTAAAGCTGGCGGTGAGAAATGGAAATCAATGTCTGATGCTGAAAAAGCTCCTTATGCTGAAAAATCTTTGGGAAGGAAGGCAGAGTACGAGATAGCTCTTGAAGTATAC
AAGAAGAAACTCGTAACTGTTTTCTTTTCTCTCTCTCATTTCGTTCCTTCAGCTTCACTTTGTCCGAACATCACCAGAATTGCTCTGCGGCCGCTGAAGCTGAAGTTGAA
ATGTCAACAGAATCACAGAAATCAACCTCTGATGTCCGTGATGACGGAGAGCAAGAAGCTAGCTCTAGCTCTTAGCTGA
mRNA sequenceShow/hide mRNA sequence
CGAGTCCGCCTAATTCTAGAAAGCCACCATGAGAGCTCTGAAGAACGCTGTCGTCACTCACAAGAAGCCTAACGCAGAGATGCTGAAAAAGAGGAAAGCTGAGATGAAAT
CCACGAAAAGCAACAAAGCCATGAAGAAAGACCAGAATGCTCCTAAACGTCCAGCCACAGCGTTCTTCATTTTCATGGAGGAATTTAGAAAGACGTTCAAGGAGAAGTTT
CCTGATGCAAAAGCTGGTCCAGCTGTTGGTAAAGCTGGCGGTGAGAAATGGAAATCAATGTCTGATGCTGAAAAAGCTCCTTATGCTGAAAAATCTTTGGGAAGGAAGGC
AGAGTACGAGATAGCTCTTGAAGTATACAAGAAGAAACTCGTAACTGTTTTCTTTTCTCTCTCTCATTTCGTTCCTTCAGCTTCACTTTGTCCGAACATCACCAGAATTG
CTCTGCGGCCGCTGAAGCTGAAGTTGAAATGTCAACAGAATCACAGAAATCAACCTCTGATGTCCGTGATGACGGAGAGCAAGAAGCTAGCTCTAGCTCTTAGCTGATAT
ATGGCTTCCTACATCGTCCGCCAAGATTTGCAGAACTTCAGGTCCCTTGGAGGTAACAGAATTTCATATATTTTTAAATAAACGTTGCATGATTGTAGGCAAGAAGCTAG
CAAGTGCAAAGAGAGTCAAGAGGAAGCTAGAAGAAATTGCATAACTCCTTAACAATTTTAGAACAAAATTAGGATTTTCCTTGGATGCATTTGTATATTCTGCGTACTTC
TCTGCTTTGGCGATGAACTGCATGTTTCATTTCCCTTGAGGTTAGTCTCTGGTTAACAAGGGTTGCATGTTTTGAGTTCCGATAAGAAAAAAAAAAAACATATGGA
Protein sequenceShow/hide protein sequence
MRALKNAVVTHKKPNAEMLKKRKAEMKSTKSNKAMKKDQNAPKRPATAFFIFMEEFRKTFKEKFPDAKAGPAVGKAGGEKWKSMSDAEKAPYAEKSLGRKAEYEIALEVY
KKKLVTVFFSLSHFVPSASLCPNITRIALRPLKLKLKCQQNHRNQPLMSVMTESKKLALALS