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CmoCh02G002360 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G002360
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionNuclear transcription factor Y subunit B-3
Genome locationCmo_Chr02:1114783..1115477
RNA-Seq ExpressionCmoCh02G002360
SyntenyCmoCh02G002360
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6570945.1 hypothetical protein SDJN03_29860, partial [Cucurbita argyrosperma subsp. sororia]6.8e-4162.35Show/hide
Query:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG
        S S  N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDNFTTTE+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTG
Subjt:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG

Query:  HYVSHEF-EDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        +YVSH+  +D+++++DDMS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  HYVSHEF-EDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

KAG6604917.1 hypothetical protein SDJN03_02234, partial [Cucurbita argyrosperma subsp. sororia]8.2e-7997.5Show/hide
Query:  SFSTLNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDE
        S +  NSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDE
Subjt:  SFSTLNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDE

Query:  EEEEDDMSSCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK
        EEEEDDMSSCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK
Subjt:  EEEEDDMSSCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK

XP_022943897.1 uncharacterized protein LOC111448485 [Cucurbita moschata]1.1e-4162.94Show/hide
Query:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG
        S S  N FP+ K +    ++E+KE+TF+S         S+PT   LL ESECADDNFTTTE+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTG
Subjt:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG

Query:  HYVSHEF-EDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        HYVSH+  +D++++EDDMS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  HYVSHEF-EDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

XP_022985724.1 uncharacterized protein LOC111483694 [Cucurbita maxima]1.1e-4163.31Show/hide
Query:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG
        S S  N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDNFTTTE+SEV W  FDR  AK L +SD+GSISDEESLIEI+LPTG
Subjt:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG

Query:  HYVSHEFEDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        HYV+H+  D+++++DDMS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  HYVSHEFEDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

XP_038902685.1 uncharacterized protein LOC120089322 [Benincasa hispida]1.2e-4263.01Show/hide
Query:  SFSTLNSFPIEKFI--------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEI
        S S  NS PI+KF+        EE++K++TF SD       S+PT G LL ESECADDNFTTTE+SEV W  FD   +K    D+SD+GSISDEESLIEI
Subjt:  SFSTLNSFPIEKFI--------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEI

Query:  SLPTGHYVSHEFED-EEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        +LPTGHYVSH+F+D ++E+ED MS  Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  SLPTGHYVSHEFED-EEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

TrEMBL top hitse value%identityAlignment
A0A0A0KCP7 Uncharacterized protein1.9e-4163.31Show/hide
Query:  SFSTLNSFPIEKFI-----EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFD-RF-KAKTLDQSDEGSISDEESLIEISLP
        S S  NS PI KF+     EE++K++TF SD       S+PT   LL ESECADDNFTTTE+SEV W  FD RF K +   +SD+GSISDEESLIEI+LP
Subjt:  SFSTLNSFPIEKFI-----EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFD-RF-KAKTLDQSDEGSISDEESLIEISLP

Query:  TGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        TGHYVS +F+D +E+EDD+S  Y++L +F  Q+KNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  TGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

A0A1S3CMD0 uncharacterized protein LOC1035021114.3e-4161.85Show/hide
Query:  SFSTLNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEIS
        S S  +S PI+KF+       EE++KE+TF SD       S+PT   LL ESECADDNFTTTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+
Subjt:  SFSTLNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEIS

Query:  LPTGHYVSHEFE--DEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        LPTGHYVS +F+  DE+E+EDD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  LPTGHYVSHEFE--DEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

A0A5D3CJH9 Uncharacterized protein4.3e-4161.85Show/hide
Query:  SFSTLNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEIS
        S S  +S PI+KF+       EE++KE+TF SD       S+PT   LL ESECADDNFTTTE+SEV W  FD   +KA++  +SD+GSISDEESLIEI+
Subjt:  SFSTLNSFPIEKFI-------EEEKKEVTFVSDR-----KSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDR--FKAKTLDQSDEGSISDEESLIEIS

Query:  LPTGHYVSHEFE--DEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        LPTGHYVS +F+  DE+E+EDD    Y++L +F  QKKNL+E+LAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  LPTGHYVSHEFE--DEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

A0A6J1FUA8 uncharacterized protein LOC1114484855.1e-4262.94Show/hide
Query:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG
        S S  N FP+ K +    ++E+KE+TF+S         S+PT   LL ESECADDNFTTTE+SEV W  FDR  A  L +SD+GSISDEESLIEI+LPTG
Subjt:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG

Query:  HYVSHEF-EDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        HYVSH+  +D++++EDDMS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  HYVSHEF-EDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

A0A6J1JE34 uncharacterized protein LOC1114836945.1e-4263.31Show/hide
Query:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG
        S S  N FP+ K +    +EE+KE+TF+S         S+PT   LL ESECADDNFTTTE+SEV W  FDR  AK L +SD+GSISDEESLIEI+LPTG
Subjt:  SFSTLNSFPIEKFI----EEEKKEVTFVS------DRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTG

Query:  HYVSHEFEDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        HYV+H+  D+++++DDMS C+++L EF+  K+KKNL+ELLAEINDI +EENLIEIDISMGSIKYSRFEI
Subjt:  HYVSHEFEDEEEEEDDMSSCYRELPEFE--KQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04480.1 unknown protein1.2e-1448.91Show/hide
Query:  KTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI
        KT ++ D+G+I D+ESLIE+SLP+GHY+ H +   +         + ++ +F      L +LL EIND  +E+NLIEIDIS+GSIKYSRFEI
Subjt:  KTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDI-DEENLIEIDISMGSIKYSRFEI

AT5G35870.1 unknown protein1.9e-1247.73Show/hide
Query:  DQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEI
        +  D+G+I DEESLIE+SLP+GHY+ H +     ++ D    Y  +P+F      L++L AE  D   +NLIEIDIS+GSIK SRF+I
Subjt:  DQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMSSCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTCTTTCTCAACCCTAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGG
TTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCG
ATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCG
TCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATC
CATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGTCTTTCTCAACCCTAAATTCATTTCCAATTGAGAAATTCATCGAAGAAGAAAAAAAAGAAGTGACTTTTGTCTCTGATCGGAAATCCTCGCCGACGGCCGGCGG
TTTACTGCCGGAGAGTGAATGTGCCGACGATAATTTCACAACCACCGAGGACTCCGAAGTGGGGTGGGGGGCTTTCGACCGGTTTAAGGCAAAAACCCTAGACCAGTCCG
ATGAGGGTTCGATTTCCGACGAGGAAAGTTTGATCGAGATCTCTCTCCCGACCGGTCATTATGTCAGCCACGAGTTCGAGGACGAGGAAGAAGAAGAGGACGACATGTCG
TCTTGTTACCGGGAGCTACCGGAATTTGAGAAGCAGAAGAAGAATCTTATGGAGCTGTTGGCTGAAATTAACGACATCGACGAGGAGAATTTGATAGAGATCGACATATC
CATGGGCTCCATTAAGTATTCAAGGTTTGAAATTGGAGGAAGGAAATAA
Protein sequenceShow/hide protein sequence
MESFSTLNSFPIEKFIEEEKKEVTFVSDRKSSPTAGGLLPESECADDNFTTTEDSEVGWGAFDRFKAKTLDQSDEGSISDEESLIEISLPTGHYVSHEFEDEEEEEDDMS
SCYRELPEFEKQKKNLMELLAEINDIDEENLIEIDISMGSIKYSRFEIGGRK