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CmoCh02G003450 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G003450
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
DescriptionAuxin-responsive protein
Genome locationCmo_Chr02:1747387..1747933
RNA-Seq ExpressionCmoCh02G003450
SyntenyCmoCh02G003450
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61880.1 hypothetical protein Csa_006123 [Cucumis sativus]4.3e-0760.78Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL
        VGE + K+FV PISYLNHPSFQ LL H+EEEF FHH Q    I  K  +F+
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL

PSS12041.1 Auxin-responsive protein [Actinidia chinensis var. chinensis]7.8e-0964.91Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDW
        VGE+E K+FV PISYLN PSFQ LL  AEEEF F H   V    AK+ S LISLLDW
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDW

XP_022146168.1 auxin-responsive protein SAUR24-like [Momordica charantia]1.5e-0761.54Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLI
        VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F++
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLI

XP_022146170.1 auxin-responsive protein SAUR21-like [Momordica charantia]4.3e-0762.75Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL
        VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F+
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL

XP_038901159.1 auxin-responsive protein SAUR24-like [Benincasa hispida]3.3e-0762.75Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL
        VGE + K+FV PISYLNHPSFQ LL+HAEEEF FHH Q    I  K  +F+
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL

TrEMBL top hitse value%identityAlignment
A0A0A0LIZ9 Uncharacterized protein2.1e-0760.78Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL
        VGE + K+FV PISYLNHPSFQ LL H+EEEF FHH Q    I  K  +F+
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL

A0A2R6QQ52 Auxin-responsive protein3.8e-0964.91Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDW
        VGE+E K+FV PISYLN PSFQ LL  AEEEF F H   V    AK+ S LISLLDW
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDW

A0A6J1CWI9 auxin-responsive protein SAUR21-like2.1e-0762.75Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL
        VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F+
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL

A0A6J1CXV3 auxin-responsive protein SAUR24-like7.1e-0861.54Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLI
        VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F++
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLI

A0A6J1CYH2 auxin-responsive protein SAUR23-like2.1e-0762.75Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL
        VGE + K+FV PISYLNHPSFQ LL HAEEEF FHH Q    I  K  +F+
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL

SwissProt top hitse value%identityAlignment
P33083 Auxin-induced protein 6B5.5e-0563.89Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        VGE + ++FV P+SYLN PSFQ LL  AEEEF +HH
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

Q9FJF6 Auxin-responsive protein SAUR234.2e-0558.33Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        VGE++ K+++ P+SYLN PSFQ LL  +EEEF F H
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

Q9FJF7 Auxin-responsive protein SAUR229.3e-0555.56Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        VGE++ K+++ P+SYLN PSFQ LL  +E+EF F H
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

Q9FJG0 Auxin-responsive protein SAUR202.4e-0561.11Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        VGE++ K+++ PISYLN PSFQ LL  +EEEF F H
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

Q9FK62 Auxin-responsive protein SAUR243.2e-0558.33Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        VGE++ K+++ P+SYLN PSFQ LL  +EEEF F H
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

Arabidopsis top hitse value%identityAlignment
AT4G34790.1 SAUR-like auxin-responsive protein family1.0e-0649.09Show/hide
Query:  YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL
        Y+G   + E K+FV PISYLNHP F+  L  AEEE  FHH      I  +  SFL
Subjt:  YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFL

AT4G34800.1 SAUR-like auxin-responsive protein family2.1e-0765Show/hide
Query:  YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        Y+G   E++ K+FV PISYLNHPSFQ LL  AEEEF F+H
Subjt:  YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

AT4G34810.1 SAUR-like auxin-responsive protein family1.6e-0760Show/hide
Query:  YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        Y+G   E E K+FV PIS+LNHPSF+  L  AEEEF F+H
Subjt:  YIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

AT4G38840.1 SAUR-like auxin-responsive protein family1.7e-0663.89Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        VGE   K+FV P+SYL+ PSFQ LL+ AEEEF F H
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH

AT5G18020.1 SAUR-like auxin-responsive protein family1.7e-0661.11Show/hide
Query:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH
        VGE++ K+++ PISYLN PSFQ LL  +EEEF F H
Subjt:  VGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTATCAATTCACCATCAATTTCTATATCGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATC
ATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCT
TGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAGAGTGTTGTAGAGTGGGAAACCTTCCTACCTATCAATTCACCATCAATTTCTATATCGGTAATGTGGGAGAGACGGAGGGAAAACAGTTTGTGTTTCCAATATC
ATACTTGAATCATCCTTCATTCCAACCACTGCTCAAACACGCTGAGGAAGAGTTTGTATTCCATCATCATCAGGATGTCAAACAAATCCTTGCAAAAAGGATGTCTTTCT
TGATTTCACTTCTAGATTGGAAGTTTCTTAAAGATGAGGGGAAAGAAAATTCACCAAGTTTTGAACATTTTCCTTGTTTTCTTGACTCGTTTATGAACTTGGATTAA
Protein sequenceShow/hide protein sequence
MLECCRVGNLPTYQFTINFYIGNVGETEGKQFVFPISYLNHPSFQPLLKHAEEEFVFHHHQDVKQILAKRMSFLISLLDWKFLKDEGKENSPSFEHFPCFLDSFMNLD