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CmoCh02G003540 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G003540
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionauxin-responsive protein SAUR24-like
Genome locationCmo_Chr02:1767636..1770423
RNA-Seq ExpressionCmoCh02G003540
SyntenyCmoCh02G003540
Gene Ontology termsGO:0009733 - response to auxin (biological process)
InterPro domainsIPR003676 - Small auxin-up RNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008457626.1 PREDICTED: auxin-responsive protein SAUR24-like [Cucumis melo]1.9e-3297.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEF+RKRFVIPISYLNH SFQQLLSRAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

XP_011649267.1 auxin-responsive protein SAUR24 [Cucumis sativus]1.5e-3297.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAK LLRRSSGNPSAVPKGHVAVYVGEF+RKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

XP_022947579.1 auxin-responsive protein SAUR24-like [Cucurbita moschata]1.7e-33100Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

XP_023007093.1 auxin-responsive protein SAUR24-like [Cucurbita maxima]1.9e-3298.65Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGF HPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

XP_038901978.1 auxin-responsive protein SAUR24-like [Benincasa hispida]2.1e-3194.59Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGE +RKRFVIPISYLNH SFQQLL+RAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

TrEMBL top hitse value%identityAlignment
A0A0A0LJ85 Uncharacterized protein7.1e-3397.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAK LLRRSSGNPSAVPKGHVAVYVGEF+RKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

A0A1S3C5H8 auxin-responsive protein SAUR24-like9.3e-3397.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEF+RKRFVIPISYLNH SFQQLLSRAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

A0A5A7TUZ6 Auxin-responsive protein SAUR24-like9.3e-3397.3Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEF+RKRFVIPISYLNH SFQQLLSRAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

A0A6J1G776 auxin-responsive protein SAUR24-like8.4e-34100Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

A0A6J1L6S0 auxin-responsive protein SAUR24-like9.3e-3398.65Show/hide
Query:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGF HPEG
Subjt:  MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

SwissProt top hitse value%identityAlignment
Q9FJF6 Auxin-responsive protein SAUR237.6e-1662.9Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+   SA PKG +AVYVGE ++KR+++P+SYLN  SFQ LLS++EEEFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

Q9FJF7 Auxin-responsive protein SAUR221.0e-1561.29Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+   SA PKG +AVYVGE ++KR+++P+SYLN  SFQ LLS++E+EFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

Q9FJG0 Auxin-responsive protein SAUR203.4e-1664.52Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+   SA PKG +AVYVGE ++KR+++PISYLN  SFQ LLS++EEEFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

Q9FJG1 Auxin-responsive protein SAUR191.4e-1459.68Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+   SA PKG +AVYVGE ++KR+++P+SYL+  SFQ LLS++EEEFGF HP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

Q9FK62 Auxin-responsive protein SAUR246.9e-1764.52Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+G  SA PKG +AVYVGE ++KR+++P+SYLN  SFQ LLS++EEEFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

Arabidopsis top hitse value%identityAlignment
AT4G34770.1 SAUR-like auxin-responsive protein family7.1e-1761.84Show/hide
Query:  IPQAKQLLRRS----------SGNPSAVPKGHVAVYVGE-FERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        + QAKQ L+RS          +   + VPKGHVAVYVGE + RKRFVIPISYLNH  FQ LL+ AEEEFGFDHP G
Subjt:  IPQAKQLLRRS----------SGNPSAVPKGHVAVYVGE-FERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

AT5G18020.1 SAUR-like auxin-responsive protein family2.4e-1764.52Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+   SA PKG +AVYVGE ++KR+++PISYLN  SFQ LLS++EEEFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

AT5G18050.1 SAUR-like auxin-responsive protein family7.1e-1761.29Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+   SA PKG +AVYVGE ++KR+++P+SYLN  SFQ LLS++E+EFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

AT5G18060.1 SAUR-like auxin-responsive protein family5.4e-1762.9Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+   SA PKG +AVYVGE ++KR+++P+SYLN  SFQ LLS++EEEFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG

AT5G18080.1 SAUR-like auxin-responsive protein family4.9e-1864.52Show/hide
Query:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG
        AK++L RS+G  SA PKG +AVYVGE ++KR+++P+SYLN  SFQ LLS++EEEFGFDHP G
Subjt:  AKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTTCGTCTTCCATCGTCTTTGATCCCTCAGGCCAAGCAATTGCTAAGGAGGAGCTCGGGAAATCCGTCGGCTGTTCCGAAAGGTCACGTTGCCGTTTACGTTGG
AGAGTTCGAGAGGAAGCGATTTGTGATTCCGATTTCGTATTTGAATCATTTTTCGTTTCAACAGCTTCTCAGTCGAGCAGAGGAAGAGTTTGGATTTGATCATCCAGAAG
GTGAGTTCTTCTATGTTGATGAAAGCCATGTGAGGAGGTCTTCCCAACAACAGCCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTTCGTCTTCCATCGTCTTTGATCCCTCAGGCCAAGCAATTGCTAAGGAGGAGCTCGGGAAATCCGTCGGCTGTTCCGAAAGGTCACGTTGCCGTTTACGTTGG
AGAGTTCGAGAGGAAGCGATTTGTGATTCCGATTTCGTATTTGAATCATTTTTCGTTTCAACAGCTTCTCAGTCGAGCAGAGGAAGAGTTTGGATTTGATCATCCAGAAG
GTGAGTTCTTCTATGTTGATGAAAGCCATGTGAGGAGGTCTTCCCAACAACAGCCTTGA
Protein sequenceShow/hide protein sequence
MGFRLPSSLIPQAKQLLRRSSGNPSAVPKGHVAVYVGEFERKRFVIPISYLNHFSFQQLLSRAEEEFGFDHPEGEFFYVDESHVRRSSQQQP