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CmoCh02G004030 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G004030
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptiontranscription factor RADIALIS-like
Genome locationCmo_Chr02:2079125..2080515
RNA-Seq ExpressionCmoCh02G004030
SyntenyCmoCh02G004030
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605078.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4593.2Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MASISSSH S+SWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPR S+DNIN QE+RMRNM
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KLG
        KLG
Subjt:  KLG

KAG7035087.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]7.6e-4694.17Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MASISSSH S+SWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTS+DNIN QE+RMRNM
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KLG
        KLG
Subjt:  KLG

XP_022946976.1 transcription factor RADIALIS-like [Cucurbita moschata]8.7e-50100Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KLG
        KLG
Subjt:  KLG

XP_023515007.1 transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]8.4e-4595.1Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MASISSSHDSTSWSPNQNKAFE ALAVFDKDTPDRWLNVAKAVGDKT DEVKRHFELLVEDVKHIESGLVPFPNYT  SSSAPRTSHDNIN QEQRMRNM
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KL
        KL
Subjt:  KL

XP_038902123.1 protein RADIALIS-like 2 [Benincasa hispida]7.9e-3579.61Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN
        MASISSSHDS SW+PNQNKAFE ALAVFDKDTPDRWLNVA AV G KT DEVKRHF+LLVEDVKHIESG VPFPNYTS+S+ A  + + N+N QEQRMRN
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN

Query:  MKL
        +KL
Subjt:  MKL

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1421.2e-3382.52Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN
        MASISSS  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVAKAV G KT DEVKRHF+ LVEDVKHIESG VPFP YTSSSSS P TS+ NI  QEQRMRN
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN

Query:  MKL
        MKL
Subjt:  MKL

A0A1S3CDK8 protein RADIALIS-like 24.7e-3380.73Show/hide
Query:  MASI-SSSHD--STSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYT--SSSSSAPRTSHD-NINGQ
        MASI SSSHD  S+SW+PNQNKAFE ALAVFDKDTPDRWLNVA AV G KT DEVKRHF+ LVEDVKHIESG VPFP YT  SSSSSAPRTS + NI  Q
Subjt:  MASI-SSSHD--STSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYT--SSSSSAPRTSHD-NINGQ

Query:  EQRMRNMKL
        EQRMRNMKL
Subjt:  EQRMRNMKL

A0A6J1G543 transcription factor RADIALIS-like4.2e-50100Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KLG
        KLG
Subjt:  KLG

A0A6J1JBS7 protein RADIALIS-like 26.1e-3377.67Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN
        MAS+SSSH S+SW+P +NKAFE ALAVFDKDTPDRWLNVAKAV G KT DEVK HF+LLVEDVKHIE G VPFPNY SS++SA  TS+ NIN QEQRMRN
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAV-GDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN

Query:  MKL
        +KL
Subjt:  MKL

A0A6J1L657 protein RADIALIS-like 15.0e-3593.9Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSA
        MASISSS DSTSWSPNQNKAFE ALA+FDKDTPDRWLNVAKAVGDKT DEVKRHFELLVEDVKHIESGLVPFPNYTSSSSS+
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSA

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 13.8e-2457.28Show/hide
Query:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN
        MAS S SS  S SW+  QNKAFE ALA +D+DTP+RW NVAK VG KT +EVKRH+ELLV+D+  IE+G VPFPNY +S       ++  ++ +E+RMRN
Subjt:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN

Query:  MKL
        M+L
Subjt:  MKL

Q1A173 Protein RADIALIS-like 68.8e-2155.88Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MAS S S  S  W+ +QNK FE ALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVED+ +IE+G VP PNY +  S++ R+ +D      ++M+N+
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KL
        K+
Subjt:  KL

Q58FS3 Transcription factor RADIALIS8.5e-2458.89Show/hide
Query:  WSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL
        WS  +NKAFE ALAV+DKDTPDRW NVA+AV  +T +EVK+H+E+LVED+K+IESG VPFPNY        RT+  N+   E+R RN+K+
Subjt:  WSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKL

Q8GW75 Protein RADIALIS-like 53.4e-2051.96Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MAS SS   S+SW+  QNK FE ALAV+DKDTPDRW NVAKAVG K+ +EVKRH+++LVED+ +IE  LVP P Y +    +     D+ +   + M+NM
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KL
        ++
Subjt:  KL

Q9SIJ5 Protein RADIALIS-like 21.6e-2255.34Show/hide
Query:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN
        MAS S SS+ S SW+  QNKAFE ALAV+D+DTPDRW NVA+AVG KT +E KR ++LLV D++ IE+G VPFP+Y +++ ++ R     +  +E+RMR+
Subjt:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN

Query:  MKL
        MKL
Subjt:  MKL

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.4e-2151.96Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MAS SS   S+SW+  QNK FE ALAV+DKDTPDRW NVAKAVG K+ +EVKRH+++LVED+ +IE  LVP P Y +    +     D+ +   + M+NM
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KL
        ++
Subjt:  KL

AT1G75250.1 RAD-like 61.1e-2163.41Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSA
        MAS S S  S  W+ +QNK FE ALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVED+ +IE+G VP PNY +  S++
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSA

AT1G75250.2 RAD-like 66.3e-2255.88Show/hide
Query:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM
        MAS S S  S  W+ +QNK FE ALAV+DKDTPDRW NVAKAVG KTV+EVKRH+++LVED+ +IE+G VP PNY +  S++ R+ +D      ++M+N+
Subjt:  MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNM

Query:  KL
        K+
Subjt:  KL

AT2G21650.1 Homeodomain-like superfamily protein1.1e-2355.34Show/hide
Query:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN
        MAS S SS+ S SW+  QNKAFE ALAV+D+DTPDRW NVA+AVG KT +E KR ++LLV D++ IE+G VPFP+Y +++ ++ R     +  +E+RMR+
Subjt:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN

Query:  MKL
        MKL
Subjt:  MKL

AT4G39250.1 RAD-like 12.7e-2557.28Show/hide
Query:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN
        MAS S SS  S SW+  QNKAFE ALA +D+DTP+RW NVAK VG KT +EVKRH+ELLV+D+  IE+G VPFPNY +S       ++  ++ +E+RMRN
Subjt:  MASIS-SSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRN

Query:  MKL
        M+L
Subjt:  MKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCATCTCCTCCTCTCATGACTCTACCTCATGGTCTCCCAACCAAAACAAAGCCTTTGAAACAGCCTTGGCTGTCTTTGACAAGGACACGCCCGATCGCTGGCT
CAATGTCGCCAAGGCCGTTGGCGACAAGACTGTCGATGAAGTCAAGAGACATTTCGAGCTTCTCGTTGAGGATGTTAAGCACATTGAATCTGGCCTCGTCCCATTTCCTA
ATTACACCTCCTCCTCCTCTTCTGCCCCTCGAACCTCCCATGATAACATCAATGGTCAAGAACAAAGGATGAGGAATATGAAGCTGGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATTCCGACGGTCGATATAGATCGGATGAAACCCGCTCCGAAAGGAGAGAGAAATGGTGCATCTTTGTGTTCTCTCCCTCTTTCCATTTTGTGGTTCCTAAGCAAACAAAT
CATTCAAAATTCTCACTCCCATTCCCTTTTCTTCCCTTCTCTATAAATCCCTTCCTTCTTCAACTCTTCTCCCTCCCTCACTTAATCCTTCATCAATGGCTTCCATCTCC
TCCTCTCATGACTCTACCTCATGGTCTCCCAACCAAAACAAAGCCTTTGAAACAGCCTTGGCTGTCTTTGACAAGGACACGCCCGATCGCTGGCTCAATGTCGCCAAGGC
CGTTGGCGACAAGACTGTCGATGAAGTCAAGAGACATTTCGAGCTTCTCGTTGAGGATGTTAAGCACATTGAATCTGGCCTCGTCCCATTTCCTAATTACACCTCCTCCT
CCTCTTCTGCCCCTCGAACCTCCCATGATAACATCAATGGTCAAGAACAAAGGATGAGGAATATGAAGCTGGGCTAAAATGGTTGAAATTGGAAGCAACTTGGAAGGGGG
TGGGATGAGGAAGAACAAAGATTGGATGGCTATTTGGAAGTCTTCAAGAATCAAAACCTGCA
Protein sequenceShow/hide protein sequence
MASISSSHDSTSWSPNQNKAFETALAVFDKDTPDRWLNVAKAVGDKTVDEVKRHFELLVEDVKHIESGLVPFPNYTSSSSSAPRTSHDNINGQEQRMRNMKLG