; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

CmoCh02G004500 (gene) of Cucurbita moschata (Rifu) v1 genome

Gene IDCmoCh02G004500
OrganismCucurbita moschata Rifu (Cucurbita moschata (Rifu) v1)
Descriptionpolyadenylate-binding protein RBP47-like
Genome locationCmo_Chr02:2351397..2353561
RNA-Seq ExpressionCmoCh02G004500
SyntenyCmoCh02G004500
Gene Ontology termsGO:0005829 - cytosol (cellular component)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605129.1 Polyadenylate-binding protein RBP47, partial [Cucurbita argyrosperma subsp. sororia]2.3e-43100Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

XP_022148600.1 polyadenylate-binding protein RBP47 [Momordica charantia]4.3e-2678.48Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG
        KNAEDAIQGLNGTVIGKQ +RLSWGRSTG+KQWR DSNNQWNGGRYG  GY GGY GYY+VPQ QD N  AT  AE+ G
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG

XP_022947439.1 polyadenylate-binding protein RBP47-like [Cucurbita moschata]2.3e-43100Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

XP_023007482.1 polyadenylate-binding protein RBP47-like [Cucurbita maxima]5.0e-4398.9Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYY+VPQQQDANTQATVGAELMGHLAPAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

XP_023533349.1 polyadenylate-binding protein RBP47 [Cucurbita pepo subsp. pepo]1.5e-4297.8Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYY+VPQQQ+ANTQATVGAELMGHLAPAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

TrEMBL top hitse value%identityAlignment
A0A0A0LKZ0 Uncharacterized protein6.0e-2674.73Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQ VRLSWGRSTG+KQWR DSNNQWNGGRYG   Y GGYGGYY+VPQ QD N   T         A AAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

A0A6J1D3C6 polyadenylate-binding protein RBP472.1e-2678.48Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG
        KNAEDAIQGLNGTVIGKQ +RLSWGRSTG+KQWR DSNNQWNGGRYG  GY GGY GYY+VPQ QD N  AT  AE+ G
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG

A0A6J1G6T8 polyadenylate-binding protein RBP47-like1.1e-43100Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

A0A6J1JGT7 polyadenylate-binding protein RBP47-like2.7e-2673.63Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQ VRLSWGRSTG+KQWR DSNNQWNGGRYG  GY GGYGGYY++PQ QDAN  A            AAAVNG+S
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

A0A6J1KYU5 polyadenylate-binding protein RBP47-like2.4e-4398.9Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS
        KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYY+VPQQQDANTQATVGAELMGHLAPAAAVNGSS
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNGSS

SwissProt top hitse value%identityAlignment
F4I3B3 Polyadenylate-binding protein RBP47A2.5e-1355.7Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG
        ++AE+AI  LNGTVIGK  VRLSWGRS  +KQWRSDS NQWNGG     GY  GY         QD+N  AT  A + G
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG

Q0WW84 Polyadenylate-binding protein RBP47B6.2e-1263.93Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGY--GGGYGGYY
        K+AEDAI+ LNGTVIGK  VRLSWGRS  +KQWR DS  QWNGG     GY  GGGY  ++
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGY--GGGYGGYY

Q9LEB3 Polyadenylate-binding protein RBP471.6e-1255.41Show/hide
Query:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGA
        +A++AIQ L+G +IGKQ VRLSWGRS  +KQ R+DS +QWNGG  G   Y GGYG  Y   Q QD+   AT  A
Subjt:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGA

Q9SX79 Polyadenylate-binding protein RBP47C2.5e-0857.14Show/hide
Query:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ
        NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y VPQ
Subjt:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ

Q9SX80 Polyadenylate-binding protein RBP47C'2.5e-0857.14Show/hide
Query:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ
        NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y VPQ
Subjt:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ

Arabidopsis top hitse value%identityAlignment
AT1G47490.1 RNA-binding protein 47C1.7e-0957.14Show/hide
Query:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ
        NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y VPQ
Subjt:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ

AT1G47500.1 RNA-binding protein 47C'1.7e-0957.14Show/hide
Query:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ
        NAE+A++ LNGTVIGKQ VRLSWGR+  +KQ R    NQW    YG    G  Y GY Y VPQ
Subjt:  NAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGY-YAVPQ

AT1G49600.1 RNA-binding protein 47A1.8e-1455.7Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG
        ++AE+AI  LNGTVIGK  VRLSWGRS  +KQWRSDS NQWNGG     GY  GY         QD+N  AT  A + G
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMG

AT3G19130.1 RNA-binding protein 47B4.4e-1363.93Show/hide
Query:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGY--GGGYGGYY
        K+AEDAI+ LNGTVIGK  VRLSWGRS  +KQWR DS  QWNGG     GY  GGGY  ++
Subjt:  KNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGY--GGGYGGYY

AT5G19350.1 RNA-binding (RRM/RBD/RNP motifs) family protein4.7e-0741.18Show/hide
Query:  GTSYV--KRGKNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSN-NQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVG
        G  YV  K   +AE+A+Q + G VIG+Q VR+SW ++ G   W + ++ NQWN    G  GYG GY   YA    QD +  A  G
Subjt:  GTSYV--KRGKNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSN-NQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGTTGCAAAAAGGTGCAGAAAAGGCTACGATCTTGGGAACCTCATATGTCAAAAGGGGAAAAAATGCCGAGGATGCAATACAGGGACTGAATGGAACAGTTATTGG
CAAGCAAATTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAGCAAGCAGTGGAGAAGTGATTCTAATAACCAATGGAATGGAGGACGTTATGGAGTCCCAGGCTACGGTG
GTGGATACGGTGGTTACTACGCAGTACCACAGCAGCAGGACGCAAACACGCAAGCCACAGTTGGCGCAGAGTTAATGGGTCATCTTGCCCCAGCTGCCGCAGTTAATGGC
TCATCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGGTTGCAAAAAGGTGCAGAAAAGGCTACGATCTTGGGAACCTCATATGTCAAAAGGGGAAAAAATGCCGAGGATGCAATACAGGGACTGAATGGAACAGTTATTGG
CAAGCAAATTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAGCAAGCAGTGGAGAAGTGATTCTAATAACCAATGGAATGGAGGACGTTATGGAGTCCCAGGCTACGGTG
GTGGATACGGTGGTTACTACGCAGTACCACAGCAGCAGGACGCAAACACGCAAGCCACAGTTGGCGCAGAGTTAATGGGTCATCTTGCCCCAGCTGCCGCAGTTAATGGC
TCATCTTGAGAAAAGAGTATGACATTGCATCAAAACACCAATCTCTTAGCTTATTCACTTTGTTATAGGGAATTTATTTAAGTTGTGCTTAACTGAATCTTTATTTACCG
AATCATGTGGCTTCATAACATTATTTCCTCATCATGCTTGCTACATCTGATGAACAATTTTGGGGTTTGGGTAGATTTCTACTATTATTATTATTTTTTCTTTAAGTTTA
AATTTACAGATTATTATAATAATAATAATAATTATTATTATTATTATTTTCGTACATAGATGTTTGGAACCATAATGTTTAGACTATCCTAGTGACATG
Protein sequenceShow/hide protein sequence
MGLQKGAEKATILGTSYVKRGKNAEDAIQGLNGTVIGKQIVRLSWGRSTGSKQWRSDSNNQWNGGRYGVPGYGGGYGGYYAVPQQQDANTQATVGAELMGHLAPAAAVNG
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